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NM_005211.3(CSF1R):c.2467C>T AND Hereditary diffuse leukoencephalopathy with spheroids

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Dec 18, 2014
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000149538.1

Allele description

NM_005211.3(CSF1R):c.2467C>T

Gene:
CSF1R:colony stimulating factor 1 receptor [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
5q32
Genomic location:
Preferred name:
NM_005211.3(CSF1R):c.2467C>T
HGVS:
  • NC_000005.10:g.150056112G>A
  • NG_012303.2:g.62261C>T
  • NM_001288705.3:c.2468C>TMANE SELECT
  • NM_001349736.2:c.2468C>T
  • NM_001375320.1:c.2468C>T
  • NM_001375321.1:c.2024C>T
  • NM_005211.4:c.2468C>T
  • NP_001275634.1:p.Ala823Val
  • NP_001336665.1:p.Ala823Val
  • NP_001362249.1:p.Ala823Val
  • NP_001362250.1:p.Ala675Val
  • NP_005202.2:p.Ala823Val
  • NP_005202.2:p.Ala823Val
  • NC_000005.9:g.149435675G>A
  • NM_005211.3:c.2468C>T
  • NR_109969.2:n.2432C>T
  • NR_164679.1:n.2361C>T
Note:
NCBI staff reviewed the sequence information reported in PubMed 24094860 to determine the location of this allele on current reference sequence.
Protein change:
A675V
Links:
dbSNP: rs690016562
NCBI 1000 Genomes Browser:
rs690016562
Molecular consequence:
  • NM_001288705.3:c.2468C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001349736.2:c.2468C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001375320.1:c.2468C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001375321.1:c.2024C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_005211.4:c.2468C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NR_109969.2:n.2432C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_164679.1:n.2361C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Name:
Hereditary diffuse leukoencephalopathy with spheroids (HDLS1)
Synonyms:
DEMENTIA, FAMILIAL, NEUMANN TYPE; SUBCORTICAL GLIOSIS OF NEUMANN; Gliosis, familial progressive subcortical; See all synonyms [MedGen]
Identifiers:
MedGen: C5561929; Orphanet: 313808; OMIM: 221820

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000196495GeneReviews
no assertion criteria provided
Pathogenic
(Dec 18, 2014)
germlineliterature only

PubMed (1)
[See all records that cite this PMID]

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Increasing and persistent DWI changes in a patient with hereditary diffuse leukoencephalopathy with spheroids.

Terasawa Y, Osaki Y, Kawarai T, Sugimoto T, Orlacchio A, Abe T, Izumi Y, Kaji R.

J Neurol Sci. 2013 Dec 15;335(1-2):213-5. doi: 10.1016/j.jns.2013.08.027. Epub 2013 Aug 30.

PubMed [citation]
PMID:
24094860

Details of each submission

From GeneReviews, SCV000196495.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Jun 18, 2022