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NM_022458.3(LMBR1):c.423+4915C>T AND Tibia, hypoplasia or aplasia of, with polydactyly

Germline classification:
Pathogenic (2 submissions)
Last evaluated:
Apr 28, 2014
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000148025.4

Allele description

NM_022458.3(LMBR1):c.423+4915C>T

Gene:
LMBR1:limb development membrane protein 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
7q36.3
Genomic location:
Preferred name:
NM_022458.3(LMBR1):c.423+4915C>T
Other names:
ZRS,402C>T
HGVS:
  • NC_000007.14:g.156791474G>A
  • NG_009240.1:g.106735C>T
  • NM_022458.3:c.423+4915C>T
  • NC_000007.13:g.156584168G>A
  • AC007097.4:g.105548C>T
Nucleotide change:
402C-T
Links:
OMIM: 605522.0021; dbSNP: rs587779752
NCBI 1000 Genomes Browser:
rs587779752
Molecular consequence:
  • NM_022458.3:c.423+4915C>T - intron variant - [Sequence Ontology: SO:0001627]

Condition(s)

Name:
Tibia, hypoplasia or aplasia of, with polydactyly (THYP)
Synonyms:
Absence of tibia with polydactyly; TIBIAL HEMIMELIA-POLYDACTYLY-TRIPHALANGEAL THUMBS WITH FIBULAR DIMELIA; Mesomelic Dysplasia, Werner Type; See all synonyms [MedGen]
Identifiers:
MedGen: C1861099; Orphanet: 3332; OMIM: 188740
Age of onset:
Infancy

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000147872Ahituv Lab,University of California San Francisco
no assertion criteria provided
Pathogenicgermlineresearch

SCV000195525OMIM
no assertion criteria provided
Pathogenic
(Apr 28, 2014)
germlineliterature only

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only
Mexicangermlineyesnot providednot providednot providednot providednot providedresearch

Citations

PubMed

A novel ZRS mutation leads to preaxial polydactyly type 2 in a heterozygous form and Werner mesomelic syndrome in a homozygous form.

VanderMeer JE, Lozano R, Sun M, Xue Y, Daentl D, Jabs EW, Wilcox WR, Ahituv N.

Hum Mutat. 2014 Aug;35(8):945-8. doi: 10.1002/humu.22581. Epub 2014 Jun 3.

PubMed [citation]
PMID:
24777739
PMCID:
PMC4110103

Details of each submission

From Ahituv Lab,University of California San Francisco, SCV000147872.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1Mexicannot providednot providednot providedresearchnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From OMIM, SCV000195525.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (1)

Description

In affected members of 2 large unrelated 5-generation Mexican kindreds segregating autosomal dominant triphalangeal thumb and/or preaxial polydactyly (PPD2; 174500), VanderMeer et al. (2014) identified heterozygosity for a c.402C-T transition in the ZRS region of the LMBR1 gene (chr7:156,584,168; GRCh37). In 1 family, a father with mild radioulnar synostosis and 3 children with isolated triphalangeal thumb were heterozygous for the mutation, which was not present in a fourth, unaffected child. In the other family, both parents of the proband had abnormal thumbs and were heterozygous for the mutation, whereas the proband, who had a more severe phenotype involving tibial and radioulnar hypoplasia, preaxial polydactyly of the hands and feet, and short triphalangeal thumbs (THYP; 188740), was homozygous for the mutation, suggestive of a dosage effect. Functional analysis using a transgenic mouse enhancer assay demonstrated ectopic expression into the anterior limb bud with the mutant.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 28, 2016