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NM_000274.4(OAT):c.425G>A (p.Gly142Glu) AND Ornithine aminotransferase deficiency

Germline classification:
Likely pathogenic (1 submission)
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000049537.1

Allele description [Variation Report for NM_000274.4(OAT):c.425G>A (p.Gly142Glu)]

NM_000274.4(OAT):c.425G>A (p.Gly142Glu)

Gene:
OAT:ornithine aminotransferase [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
10q26.13
Genomic location:
Preferred name:
NM_000274.4(OAT):c.425G>A (p.Gly142Glu)
HGVS:
  • NC_000010.11:g.124408637C>T
  • NG_008861.1:g.15314G>A
  • NM_000274.4:c.425G>AMANE SELECT
  • NM_001171814.2:c.11G>A
  • NM_001322965.2:c.425G>A
  • NM_001322966.2:c.425G>A
  • NM_001322967.2:c.425G>A
  • NM_001322968.2:c.425G>A
  • NM_001322969.2:c.425G>A
  • NM_001322970.2:c.425G>A
  • NM_001322971.2:c.200-3074G>A
  • NM_001322974.2:c.-290G>A
  • NP_000265.1:p.Gly142Glu
  • NP_000265.1:p.Gly142Glu
  • NP_001165285.1:p.Gly4Glu
  • NP_001309894.1:p.Gly142Glu
  • NP_001309895.1:p.Gly142Glu
  • NP_001309896.1:p.Gly142Glu
  • NP_001309897.1:p.Gly142Glu
  • NP_001309898.1:p.Gly142Glu
  • NP_001309899.1:p.Gly142Glu
  • LRG_685t1:c.425G>A
  • LRG_685:g.15314G>A
  • LRG_685p1:p.Gly142Glu
  • NC_000010.10:g.126097206C>T
  • NM_000274.3:c.425G>A
Protein change:
G142E
Links:
dbSNP: rs386833610
NCBI 1000 Genomes Browser:
rs386833610
Molecular consequence:
  • NM_001322974.2:c.-290G>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001322971.2:c.200-3074G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_000274.4:c.425G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001171814.2:c.11G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001322965.2:c.425G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001322966.2:c.425G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001322967.2:c.425G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001322968.2:c.425G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001322969.2:c.425G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001322970.2:c.425G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Ornithine aminotransferase deficiency (GACR)
Synonyms:
OAT deficiency; Ornithine ketoacid aminotransferase deficiency; Gyrate atrophy; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0009796; MedGen: C0018425; Orphanet: 414; OMIM: 258870

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000081974Juha Muilu Group; Institute for Molecular Medicine Finland (FIMM)
no assertion criteria provided
probable-pathogenicnot providednot provided

PubMed (1)
[See all records that cite this PMID]

Description

FinDis database variant: This variant was not found or characterized by our laboratory, data were collected from public sources: see reference

SCV000081974

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providednot providednot providednot providednot providednot provided1not providedliterature only

Citations

PubMed

Heterogeneity and uniqueness of ornithine aminotransferase mutations found in Japanese gyrate atrophy patients.

Mashima Y, Shiono T, Tamai M, Inana G.

Curr Eye Res. 1996 Jul;15(7):792-6.

PubMed [citation]
PMID:
8670789

Details of each submission

From Juha Muilu Group; Institute for Molecular Medicine Finland (FIMM), SCV000081974.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providednot provided PubMed (1)

Description

Converted during submission to Likely pathogenic.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1not providednot provided1not providednot providednot providednot providednot providednot provided

Last Updated: Apr 23, 2022