U.S. flag

An official website of the United States government

  • delete

NM_078470.6(COX15):c.649C>T (p.Arg217Trp) AND Leigh syndrome due to mitochondrial complex IV deficiency

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Apr 1, 2011
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000033252.3

Allele description

NM_078470.6(COX15):c.649C>T (p.Arg217Trp)

Gene:
COX15:cytochrome c oxidase assembly homolog COX15 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
10q24.2
Genomic location:
Preferred name:
NM_078470.6(COX15):c.649C>T (p.Arg217Trp)
HGVS:
  • NC_000010.11:g.99724057G>A
  • NG_008986.1:g.13610C>T
  • NM_001320974.2:c.649C>T
  • NM_001320975.2:c.649C>T
  • NM_001320976.2:c.112C>T
  • NM_001372024.1:c.649C>T
  • NM_001372025.1:c.649C>T
  • NM_001372026.1:c.649C>T
  • NM_001372027.1:c.649C>T
  • NM_001372028.1:c.649C>T
  • NM_004376.7:c.649C>T
  • NM_078470.6:c.649C>TMANE SELECT
  • NP_001307903.1:p.Arg217Trp
  • NP_001307904.1:p.Arg217Trp
  • NP_001307905.1:p.Arg38Trp
  • NP_001358953.1:p.Arg217Trp
  • NP_001358954.1:p.Arg217Trp
  • NP_001358955.1:p.Arg217Trp
  • NP_001358956.1:p.Arg217Trp
  • NP_001358957.1:p.Arg217Trp
  • NP_004367.2:p.Arg217Trp
  • NP_510870.1:p.Arg217Trp
  • LRG_406:g.13610C>T
  • NC_000010.10:g.101483814G>A
  • NR_164009.1:n.644C>T
  • Q7KZN9:p.Arg217Trp
Protein change:
R217W; ARG217TRP
Links:
UniProtKB: Q7KZN9#VAR_019596; OMIM: 603646.0001; dbSNP: rs28939711
NCBI 1000 Genomes Browser:
rs28939711
Molecular consequence:
  • NM_001320974.2:c.649C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001320975.2:c.649C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001320976.2:c.112C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001372024.1:c.649C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001372025.1:c.649C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001372026.1:c.649C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001372027.1:c.649C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001372028.1:c.649C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_004376.7:c.649C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_078470.6:c.649C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NR_164009.1:n.644C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Name:
Leigh syndrome due to mitochondrial complex IV deficiency
Identifiers:
MedGen: C1850599

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000057115OMIM
no assertion criteria provided
Pathogenic
(Apr 1, 2011)
germlineliterature only

PubMed (4)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Isoforms of mammalian cytochrome c oxidase: correlation with human cytochrome c oxidase deficiency.

Kennaway NG, Carrero-Valenzuela RD, Ewart G, Balan VK, Lightowlers R, Zhang YZ, Powell BR, Capaldi RA, Buist NR.

Pediatr Res. 1990 Nov;28(5):529-35. Review.

PubMed [citation]
PMID:
2175025

Mutations in COX15 produce a defect in the mitochondrial heme biosynthetic pathway, causing early-onset fatal hypertrophic cardiomyopathy.

Antonicka H, Mattman A, Carlson CG, Glerum DM, Hoffbuhr KC, Leary SC, Kennaway NG, Shoubridge EA.

Am J Hum Genet. 2003 Jan;72(1):101-14. Epub 2002 Dec 9.

PubMed [citation]
PMID:
12474143
PMCID:
PMC378614
See all PubMed Citations (4)

Details of each submission

From OMIM, SCV000057115.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (4)

Description

In a female infant who had fatal infantile cytochrome c oxidase deficiency with predominantly cardiac involvement and relative sparing of skeletal muscle (CEMCOX2; 615119), originally reported by Kennaway et al. (1990), Antonicka et al. (2003) identified compound heterozygosity for a 700C-T transition on 1 allele, resulting in an arg217-to-trp (R217W) substitution, and a splice site mutation in intron 3 on the other allele (C447-3G), resulting in deletion of exon 4 (603646.0002). The splicing error introduced a frameshift and a premature stop codon, resulting in an unstable mRNA and, likely, a null allele.

In an infant girl with isolated complex IV deficiency that was more marked in cardiac than skeletal muscle, who died at day 9 of life with encephalopathy, respiratory depression, and marked cardiac hypertrophy, Alfadhel et al. (2011) identified compound heterozygosity for the R217W missense mutation and a nonsense mutation (S151X; 603646.0003) in the COX15 gene.

In a patient with Leigh syndrome due to cytochrome c oxidase deficiency (256000), Oquendo et al. (2004) identified homozygosity for the R217W mutation. Both parents were heterozygous for the mutation. The authors noted the phenotypic variation associated with this mutation.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Aug 20, 2020