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NM_000112.4(SLC26A2):c.1724del (p.Lys575fs) AND Achondrogenesis, type IB

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Feb 1, 1996
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000023567.4

Allele description

NM_000112.4(SLC26A2):c.1724del (p.Lys575fs)

Gene:
SLC26A2:solute carrier family 26 member 2 [Gene - OMIM - HGNC]
Variant type:
Deletion
Cytogenetic location:
5q32
Genomic location:
Preferred name:
NM_000112.4(SLC26A2):c.1724del (p.Lys575fs)
HGVS:
  • NC_000005.10:g.149981317del
  • NG_007147.2:g.22435del
  • NM_000112.3:c.1724del
  • NM_000112.4:c.1724delMANE SELECT
  • NP_000103.2:p.Lys575fs
  • NP_000103.2:p.Lys575fs
  • LRG_684t1:c.1724del
  • LRG_684:g.22435del
  • LRG_684p1:p.Lys575fs
  • NC_000005.9:g.149360879del
  • NC_000005.9:g.149360880del
  • NM_000112.3:c.1724delA
Note:
NCBI staff reviewed the sequence information reported in PubMed 7923357 Fig. 6 to determine the location of this allele on the current reference sequence.
Protein change:
K575fs
Links:
OMIM: 606718.0001; dbSNP: rs386833498
NCBI 1000 Genomes Browser:
rs386833498
Molecular consequence:
  • NM_000112.3:c.1724del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_000112.4:c.1724del - frameshift variant - [Sequence Ontology: SO:0001589]

Condition(s)

Name:
Achondrogenesis, type IB (ACG1B)
Synonyms:
Achondrogenesis Fraccaro type
Identifiers:
MONDO: MONDO:0010966; MedGen: C0265274; Orphanet: 932; Orphanet: 93298; OMIM: 600972

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000044858OMIM
no assertion criteria provided
Pathogenic
(Feb 1, 1996)
germlineliterature only

PubMed (3)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

The diastrophic dysplasia gene encodes a novel sulfate transporter: positional cloning by fine-structure linkage disequilibrium mapping.

Hästbacka J, de la Chapelle A, Mahtani MM, Clines G, Reeve-Daly MP, Daly M, Hamilton BA, Kusumi K, Trivedi B, Weaver A, et al.

Cell. 1994 Sep 23;78(6):1073-87.

PubMed [citation]
PMID:
7923357

Achondrogenesis type IB is caused by mutations in the diastrophic dysplasia sulphate transporter gene.

Superti-Furga A, Hästbacka J, Wilcox WR, Cohn DH, van der Harten HJ, Rossi A, Blau N, Rimoin DL, Steinmann B, Lander ES, Gitzelmann R.

Nat Genet. 1996 Jan;12(1):100-2. No abstract available.

PubMed [citation]
PMID:
8528239
See all PubMed Citations (3)

Details of each submission

From OMIM, SCV000044858.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (3)

Description

In 3 patients with diastrophic dysplasia (DTD; 222600) from Germany, the Netherlands, and France, respectively, Hastbacka et al. (1994) identified heterozygosity for a deletion of 1 nucleotide in codon 575 of the DTD gene (SLC26A2), converting AAG to AG; this mutation resulted in a frameshift, causing a premature translational stop after 9 codons that would eliminate the last 20% of the protein. The deletion destroyed a DdeI site and created a BfaI site, providing a simple assay for the presence of the mutation. The patients presumably carried a different DTD mutation on the other homolog. Examination of 100 normal chromosomes confirmed that the deletion was not a polymorphism.

Superti-Furga et al. (1996) found that this mutation, which they called the 1751A deletion, results in diastrophic dysplasia when compounded with the presumed reduced-expression allele frequent in Finland (606718.0010), but produces achondrogenesis type IB (ACG1B; 600972) when compounded with a second structural mutation on the other chromosome, such as N425D (606718.0006).

In a patient with atelosteogenesis type II (AO2; 256050), Hastbacka et al. (1996) identified compound heterozygosity for 1751delA and an 862C-T transition resulting in an R279W substitution (606718.0002) in the third extracellular loop.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 25, 2021