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NM_002764.4(PRPS1):c.424G>C (p.Val142Leu) AND Arts syndrome

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Feb 1, 2012
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000022882.4

Allele description [Variation Report for NM_002764.4(PRPS1):c.424G>C (p.Val142Leu)]

NM_002764.4(PRPS1):c.424G>C (p.Val142Leu)

Gene:
PRPS1:phosphoribosyl pyrophosphate synthetase 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
Xq22.3
Genomic location:
Preferred name:
NM_002764.4(PRPS1):c.424G>C (p.Val142Leu)
HGVS:
  • NC_000023.11:g.107642384G>C
  • NG_008407.1:g.18961G>C
  • NM_001204402.2:c.-82-2793G>C
  • NM_002764.4:c.424G>CMANE SELECT
  • NP_002755.1:p.Val142Leu
  • NP_002755.1:p.Val142Leu
  • LRG_264t1:c.424G>C
  • LRG_264:g.18961G>C
  • LRG_264p1:p.Val142Leu
  • NC_000023.10:g.106885614G>C
  • NM_002764.3:c.424G>C
Protein change:
V142L; VAL142LEU
Links:
OMIM: 311850.0017; dbSNP: rs398122855
NCBI 1000 Genomes Browser:
rs398122855
Molecular consequence:
  • NM_001204402.2:c.-82-2793G>C - intron variant - [Sequence Ontology: SO:0001627]
  • NM_002764.4:c.424G>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Arts syndrome (ARTS)
Synonyms:
X-linked fatal ataxia with deafness and loss of vision; MENTAL RETARDATION, X-LINKED, SYNDROMIC 18; MENTAL RETARDATION, X-LINKED, SYNDROMIC, ARTS TYPE; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0010533; MedGen: C0796028; Orphanet: 1187; OMIM: 301835

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000044173OMIM
no assertion criteria provided
Pathogenic
(Feb 1, 2012)
germlineliterature only

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Phosphoribosylpyrophosphate synthetase superactivity and recurrent infections is caused by a p.Val142Leu mutation in PRS-I.

Moran R, Kuilenburg AB, Duley J, Nabuurs SB, Retno-Fitri A, Christodoulou J, Roelofsen J, Yntema HG, Friedman NR, van Bokhoven H, de Brouwer AP.

Am J Med Genet A. 2012 Feb;158A(2):455-60. doi: 10.1002/ajmg.a.34428. Epub 2012 Jan 13.

PubMed [citation]
PMID:
22246954

Details of each submission

From OMIM, SCV000044173.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (1)

Description

In a boy with a complex phenotype comprising Arts syndrome and PRPS1 superactivity (see 301835), Moran et al. (2012) identified a 424G-C transversion in exon 4 of the PRPS1 gene, resulting in a val142-to-leu (V142L) substitution at a highly conserved residue. Both the mother and grandmother were heterozygous for the mutation, which was not found in 202 control alleles. The patient had developmental delay, hypotonia, areflexia, motor neuropathy, sensorineural hearing loss, and a Chiari I malformation. Laboratory studies showed increased serum uric acid and increased urinary hypoxanthine consistent with PRPS1 superactivity, but he did not have gout. In addition, he had recurrent infections and early death at age 27 months from infection, consistent with Arts syndrome. A maternal uncle with similar symptoms had died of pneumonia at age 2. Molecular modeling predicted that the substitution would disrupt allosteric sites involved in inhibition of PRPS1, resulting in a gain of enzyme function, and the ATP-binding site, resulting in a loss of enzyme function. Patient fibroblasts showed normal PRPP synthetase activity, whereas erythrocytes showed a loss of enzyme activity, suggesting that the effect of the V142L mutation on protein activity depends on cell type. Moran et al. (2012) postulated a gain-of-function effect in proliferating cells and a loss-of-function effect in postmitotic cells. The report indicated that PRPS1 missense mutations can cause a continuous spectrum of features ranging from progressive nonsyndromic postlingual hearing impairment to uric acid overproduction, neuropathy, and recurrent infections depending on the functional sites affected.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Apr 23, 2022