U.S. flag

An official website of the United States government

NM_144773.3(PROKR2):c.518T>G (p.Leu173Arg) AND Kallmann syndrome 3

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Jan 1, 2009
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000022406.3

Allele description

NM_144773.3(PROKR2):c.518T>G (p.Leu173Arg)

Gene:
PROKR2:prokineticin receptor 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
20p12.3
Genomic location:
Preferred name:
NM_144773.3(PROKR2):c.518T>G (p.Leu173Arg)
HGVS:
  • NC_000020.11:g.5302677A>C
  • NG_008132.1:g.16693T>G
  • NG_008132.2:g.16693T>G
  • NM_144773.3:c.518T>G
  • NP_658986.1:p.Leu173Arg
  • NC_000020.10:g.5283323A>C
  • NM_144773.2:c.518T>G
  • Q8NFJ6:p.Leu173Arg
Protein change:
L173R; LEU173ARG
Links:
UniProtKB: Q8NFJ6#VAR_030960; OMIM: 607123.0001; dbSNP: rs74315416
NCBI 1000 Genomes Browser:
rs74315416
Molecular consequence:
  • NM_144773.3:c.518T>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Kallmann syndrome 3 (KAL3)
Synonyms:
HYPOGONADOTROPIC HYPOGONADISM 3 WITH ANOSMIA; PROKR2-Related Isolated Gonadotropin-Releasing Hormone (GnRH) Deficiency
Identifiers:
MedGen: C3550478; Orphanet: 478; OMIM: 244200

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000043091OMIM
no assertion criteria provided
Pathogenic
(Jan 1, 2009)
germlineliterature only

PubMed (3)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Kallmann syndrome: mutations in the genes encoding prokineticin-2 and prokineticin receptor-2.

Dodé C, Teixeira L, Levilliers J, Fouveaut C, Bouchard P, Kottler ML, Lespinasse J, Lienhardt-Roussie A, Mathieu M, Moerman A, Morgan G, Murat A, Toublanc JE, Wolczynski S, Delpech M, Petit C, Young J, Hardelin JP.

PLoS Genet. 2006 Oct 20;2(10):e175. Epub 2006 Sep 1.

PubMed [citation]
PMID:
17054399
PMCID:
PMC1617130

Mutations in prokineticin 2 and prokineticin receptor 2 genes in human gonadotrophin-releasing hormone deficiency: molecular genetics and clinical spectrum.

Cole LW, Sidis Y, Zhang C, Quinton R, Plummer L, Pignatelli D, Hughes VA, Dwyer AA, Raivio T, Hayes FJ, Seminara SB, Huot C, Alos N, Speiser P, Takeshita A, Van Vliet G, Pearce S, Crowley WF Jr, Zhou QY, Pitteloud N.

J Clin Endocrinol Metab. 2008 Sep;93(9):3551-9. doi: 10.1210/jc.2007-2654. Epub 2008 Jun 17.

PubMed [citation]
PMID:
18559922
PMCID:
PMC2567850
See all PubMed Citations (3)

Details of each submission

From OMIM, SCV000043091.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (3)

Description

Dode et al. (2006) identified a 518T-G transversion in exon 2 of the PROKR2 gene, resulting in a leu173-to-arg (L173R) substitution, in patients with Kallmann syndrome (HH3; 244200). The mutation was found in heterozygous state in a family and in 3 sporadic cases, in homozygous state in a sporadic case, and in compound heterozygous state with a Q210R mutation (607123.0002) in another family. In a sporadic case of Kallmann syndrome, Dode et al. (2006) found heterozygosity for L173R as well as heterozygosity for a mutation in the KAL1 gene (300836.0012), suggesting digenic inheritance. The L173R and Q210R mutations in the PROKR2 gene were not found in 500 ethnically matched (Caucasian) control alleles.

In 2 unrelated male patients with Kallmann syndrome, Cole et al. (2008) identified heterozygosity for the L173R mutation in the PROKR2 gene. The mutation was not found in 346 control alleles. Functional analysis involving gene transcription and calcium flux assays demonstrated severely compromised activity with the L173R mutant compared to wildtype in both assays. Both patients had complete absence of puberty with undetectable levels of luteinizing hormone (LH; 152780), and their sense of smell was below the fifth percentile on olfactory testing; MRI performed in 1 of the patients showed absence of the olfactory bulbs. Additional features included pes planus, pectus excavatum, and synkinesia in 1 patient and cryptorchidism in the other.

Monnier et al. (2009) performed functional analysis of the L173R mutation in HEK293 cells and demonstrated decreased signaling and impaired cell-surface targeting of the receptor compared to wildtype.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Dec 17, 2019