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NM_000350.2(ABCA4):c.5882G>A (p.Gly1961Glu) AND Cone-rod dystrophy 3

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Jul 1, 2008
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000008341.3

Allele description

NM_000350.2(ABCA4):c.5882G>A (p.Gly1961Glu)

Gene:
ABCA4:ATP binding cassette subfamily A member 4 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
1p22.1
Genomic location:
Preferred name:
NM_000350.2(ABCA4):c.5882G>A (p.Gly1961Glu)
HGVS:
  • NC_000001.11:g.94008251C>T
  • NG_009073.1:g.117899G>A
  • NM_000350.2:c.5882G>A
  • NP_000341.2:p.Gly1961Glu
  • NC_000001.10:g.94473807C>T
  • P78363:p.Gly1961Glu
Protein change:
G1961E; GLY1961GLU
Links:
UniProtKB: P78363#VAR_008475; OMIM: 601691.0007; dbSNP: rs1800553
GMAF:
0.0032(T), 1800553
NCBI 1000 Genomes Browser:
rs1800553
Allele Frequency:
0.0032, GO-ESP
Molecular consequence:
  • NM_000350.2:c.5882G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Cone-rod dystrophy 3 (CORD3)
Identifiers:
MedGen: C1858806; Orphanet: 1872; OMIM: 604116
Age of onset:
Childhood
Prevalence:
1-9 / 100 000 1872

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000028549OMIM
no assertion criteria provided
Pathogenic
(Jul 1, 2008)
germlineliterature only

PubMed (3)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Mutation of the Stargardt disease gene (ABCR) in age-related macular degeneration.

Allikmets R, Shroyer NF, Singh N, Seddon JM, Lewis RA, Bernstein PS, Peiffer A, Zabriskie NA, Li Y, Hutchinson A, Dean M, Lupski JR, Leppert M.

Science. 1997 Sep 19;277(5333):1805-7.

PubMed [citation]
PMID:
9295268

Genotype/Phenotype analysis of a photoreceptor-specific ATP-binding cassette transporter gene, ABCR, in Stargardt disease.

Lewis RA, Shroyer NF, Singh N, Allikmets R, Hutchinson A, Li Y, Lupski JR, Leppert M, Dean M.

Am J Hum Genet. 1999 Feb;64(2):422-34.

PubMed [citation]
PMID:
9973280
PMCID:
PMC1377752
See all PubMed Citations (3)

Details of each submission

From OMIM, SCV000028549.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (3)

Description

In 6 of 167 patients with age-related macular dystrophy (ARMD2; 153800), Allikmets et al. (1997) found a gly1961-to-glu (G1961E) alteration in the ABCR protein. The associated pathology ranged from a few tiny juxtafoveal drusen in 1 eye of a patient (age 74 years), to confluent drusen and drusenoid retinal pigment epithelium (RPE) detachments (age 78 years), to various forms of soft to calcified macular drusen and extensive geographic atrophy (more than 1 disc diameter) (ages 81 and 82 years, respectively).

In a study of 150 families with recessive Stargardt disease (248200), Lewis et al. (1999) found that the G1961E mutation was present in 16 of 173 chromosomes in which mutation was identified. G1961E in heterozygous state had previously been associated with age-related macular degeneration. In 150 families with STGD1, a high frequency of ARMD in first- and second-degree relatives was found, suggesting that heterozygosity enhances susceptibility to ARMD.

In a 14-year-old female with cone dystrophy (CORD3; 604116), Kitiratschky et al. (2008) identified compound heterozygosity for a 5882G-A transition in exon 42 of the ABCA4 gene, resulting in the G1961E substitution, and a splice site mutation (601691.0030). The patient, who had onset of disease at 6 years of age, had a red-green defect of color vision, normal glare sensitivity and night vision, RPE atrophy of the macula and peripheral retina, central scotoma, and a reduced cone but normal rod electroretinogram (ERG). Both mutations were also identified in her affected brother, and their unaffected parents were each heterozygous for 1 of the mutations, respectively.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Dec 6, 2016