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NM_006941.3(SOX10):c.698-2A>C AND Waardenburg syndrome type 2E, with neurologic involvement

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Apr 15, 2008
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000007834.3

Allele description

NM_006941.3(SOX10):c.698-2A>C

Genes:
POLR2F:RNA polymerase II subunit F [Gene - OMIM - HGNC]
SOX10:SRY-box 10 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
22q13.1
Genomic location:
Preferred name:
NM_006941.3(SOX10):c.698-2A>C
HGVS:
  • NC_000022.11:g.37974200T>G
  • NG_007948.1:g.15333A>C
  • NM_006941.3:c.698-2A>C
  • LRG_271t1:c.698-2A>C
  • LRG_271:g.15333A>C
  • NC_000022.10:g.38370207T>G
Nucleotide change:
IVS4AS, A-C, -2
Links:
OMIM: 602229.0017; dbSNP: rs397515370
NCBI 1000 Genomes Browser:
rs397515370
Molecular consequence:
  • NM_006941.3:c.698-2A>C - splice acceptor variant - [Sequence Ontology: SO:0001574]

Condition(s)

Name:
Waardenburg syndrome type 2E, with neurologic involvement
Identifiers:
MedGen: CN069053

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000028039OMIM
no assertion criteria provided
Pathogenic
(Apr 15, 2008)
germlineliterature only

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

A de novo SOX10 mutation causing severe type 4 Waardenburg syndrome without Hirschsprung disease.

Sznajer Y, Coldéa C, Meire F, Delpierre I, Sekhara T, Touraine RL.

Am J Med Genet A. 2008 Apr 15;146A(8):1038-41. doi: 10.1002/ajmg.a.32247.

PubMed [citation]
PMID:
18348267

Details of each submission

From OMIM, SCV000028039.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (1)

Description

In a boy with Waardenburg syndrome type 2E (611584), Sznajer et al. (2008) identified a heterozygous de novo A-to-C transversion in intron 4 of the SOX10 gene. In addition to sensorineural deafness and vivid blue eyes, he had neurologic abnormalities, including white matter anomalies, mental retardation with autistic-like behavior, hypotonia, and a generalized peripheral neuropathy. Brain imaging showed complete agenesis of the semicircular canals. Hirschsprung disease was absent. Sznajer et al. (2008) hypothesized that the mutation decreased the strength of the acceptor splice site and increased the strength of at least 1 cryptic site 5 nucleotides downstream. Utilization of this cryptic site would cause a frameshift and premature termination 46 residues downstream. The mutation was not present in either parent or in 300 control chromosomes.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Aug 29, 2016