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NM_000492.4(CFTR):c.2991G>C (p.Leu997Phe) AND Pancreatitis, idiopathic, susceptibility to

Germline classification:
risk factor (1 submission)
Last evaluated:
Jan 1, 2001
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000007650.12

Allele description [Variation Report for NM_000492.4(CFTR):c.2991G>C (p.Leu997Phe)]

NM_000492.4(CFTR):c.2991G>C (p.Leu997Phe)

Genes:
CFTR:CF transmembrane conductance regulator [Gene - OMIM - HGNC]
LOC111674472:DNase I hypersensitive sites in introns 16 and 17a of CFTR [Gene]
Variant type:
single nucleotide variant
Cytogenetic location:
7q31.2
Genomic location:
Preferred name:
NM_000492.4(CFTR):c.2991G>C (p.Leu997Phe)
HGVS:
  • NC_000007.14:g.117610521G>C
  • NG_016465.4:g.149738G>C
  • NG_056128.2:g.3575G>C
  • NM_000492.4:c.2991G>CMANE SELECT
  • NP_000483.3:p.Leu997Phe
  • NP_000483.3:p.Leu997Phe
  • LRG_663t1:c.2991G>C
  • LRG_663:g.149738G>C
  • LRG_663p1:p.Leu997Phe
  • NC_000007.13:g.117250575G>C
  • NG_056128.1:g.3575G>C
  • NM_000492.3:c.2991G>C
  • P13569:p.Leu997Phe
Protein change:
L997F; LEU997PHE
Links:
UniProtKB: P13569#VAR_000227; OMIM: 602421.0124; dbSNP: rs1800111
NCBI 1000 Genomes Browser:
rs1800111
Molecular consequence:
  • NM_000492.4:c.2991G>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Pancreatitis, idiopathic, susceptibility to
Identifiers:

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000027851OMIM
no assertion criteria provided
risk factor
(Jan 1, 2001)
germlineliterature only

PubMed (4)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

High frequency of cystic fibrosis transmembrane regulator mutation L997F in patients with recurrent idiopathic pancreatitis and in newborns with hypertrypsinemia.

Gomez Lira M, Benetazzo MG, Marzari MG, Bombieri C, Belpinati F, Castellani C, Cavallini GC, Mastella G, Pignatti PF.

Am J Hum Genet. 2000 Jun;66(6):2013-4. No abstract available.

PubMed [citation]
PMID:
10801389
PMCID:
PMC1378065

Prevalence of CFTR mutations in hypertrypsinaemia detected through neonatal screening for cystic fibrosis.

Scotet V, De Braekeleer M, Audrézet MP, Lodé L, Verlingue C, Quéré I, Mercier B, Duguépéroux I, Codet JP, Moineau MP, Parent P, Férec C.

Clin Genet. 2001 Jan;59(1):42-7.

PubMed [citation]
PMID:
11168024
See all PubMed Citations (4)

Details of each submission

From OMIM, SCV000027851.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (4)

Description

Gomez Lira et al. (2000) postulated that there might be particular CFTR gene mutations involved in pancreatic ductular obstruction, as manifested in idiopathic pancreatitis or in neonatal hypertrypsinemia. Following up on this hypothesis, they performed a complete screening of the CFTR gene in a group of 32 patients with idiopathic pancreatitis (14 of whom carried the 5T variant CF mutation (602421.0086) or had a borderline sweat chloride level, and 18 of whom were without common CF mutations or any other CF characteristic) and in 49 newborns with hypertrypsinemia and normal sweat chloride (32 of whom had a common CF mutation, and 17 of whom did not have a common CF mutation). Rare mutations were found in 9 of 32 patients with idiopathic pancreatitis and in 21 of 49 newborns with hypertrypsinemia. Of these rare mutations, leu997 to phe (L997F) was identified in 4 (12.5%) of 32 patients with idiopathic pancreatitis and in 4 (8%) of 39 newborns with hypertrypsinemia. L997 is a highly conserved residue in transmembrane domain 9.

Since most neonatal screening programs for cystic fibrosis combine the assay of immunoreactive trypsinogen (IRT) with analysis for the most common mutations of the CFTR gene, the identification of heterozygotes among neonates because of increased IRT is considered a drawback. Scotet et al. (2001) assessed the heterozygosity frequency among children with hypertrypsinemia detected during a CF screening program in Brittany (France) 10 years previously. A total of 160,019 babies were screened for CF between 1992 and 1998. Of the 1,964 newborns with increased IRT (1.2%), 60 had CF and 213 were carriers. Heterozygosity frequency was 12.8%, or 3 times greater than in the general population (3.9%). A high proportion of mild mutations or variants was observed in carriers. The allelic frequency of the 5T variant (5.6%) was not increased. The study was consistent with previous ones in finding a significantly higher rate of heterozygotes than expected among neonates with hypertrypsinemia.

Kabra et al. (2000) identified the L997F mutation in a Pakistani patient with cystic fibrosis (219700), but did not identify the second mutation.

Derichs et al. (2005) reported a child, born of consanguineous Turkish parents, who was homozygous for the L997F substitution. The child showed normal development with no evidence of pancreatic insufficiency or cystic fibrosis. Sweat chloride tests and intestinal chloride secretion were normal. Derichs et al. (2005) concluded that the L997F mutation does not cause cystic fibrosis.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Jun 2, 2024