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NM_000097.7(CPOX):c.1210A>G (p.Lys404Glu) AND Harderoporphyria

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Feb 15, 1998
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000000482.2

Allele description

NM_000097.7(CPOX):c.1210A>G (p.Lys404Glu)

Gene:
CPOX:coproporphyrinogen oxidase [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
3q11.2
Genomic location:
Preferred name:
NM_000097.7(CPOX):c.1210A>G (p.Lys404Glu)
HGVS:
  • NC_000003.12:g.98581474T>C
  • NG_015994.2:g.17138A>G
  • NM_000097.7:c.1210A>G
  • NP_000088.3:p.Lys404Glu
  • LRG_1077t1:c.1210A>G
  • LRG_1077:g.17138A>G
  • LRG_1077p1:p.Lys404Glu
  • NC_000003.11:g.98300318T>C
  • NM_000097.5:c.1210A>G
  • P36551:p.Lys404Glu
Protein change:
K404E; LYS404GLU
Links:
UniProtKB: P36551#VAR_002162; OMIM: 612732.0003; dbSNP: rs121917868
NCBI 1000 Genomes Browser:
rs121917868
Molecular consequence:
  • NM_000097.7:c.1210A>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Harderoporphyria
Identifiers:
MedGen: C0342859

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000020631OMIM
no assertion criteria provided
Pathogenic
(Feb 15, 1998)
germlineliterature only

PubMed (5)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Harderoporphyria: a variant hereditary coproporphyria.

Nordmann Y, Grandchamp B, de Verneuil H, Phung L, Cartigny B, Fontaine G.

J Clin Invest. 1983 Sep;72(3):1139-49.

PubMed [citation]
PMID:
6886003
PMCID:
PMC1129282

A molecular defect in coproporphyrinogen oxidase gene causing harderoporphyria, a variant form of hereditary coproporphyria.

Lamoril J, Martasek P, Deybach JC, Da Silva V, Grandchamp B, Nordmann Y.

Hum Mol Genet. 1995 Feb;4(2):275-8.

PubMed [citation]
PMID:
7757079
See all PubMed Citations (5)

Details of each submission

From OMIM, SCV000020631.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (5)

Description

In the kindred reported by Nordmann et al. (1983) in which 3 sibs had harderoporphyria (see 121300), Lamoril et al. (1995) found by sequencing cDNA and genomic DNA that the patients carried a point mutation resulting in a LYS304GLU substitution (now known as lys404-to-glu) in exon 6 and the absence of the normal allele, suggesting a homozygous state for the mutation. Enzymatic activity studies of protein expressed from normal and mutated CPO cDNA in E. coli demonstrated that the K404E amino acid substitution was responsible for both the decrease in the enzyme activity and the accumulation of harderoporphyrin. The Michaelis constant of the mutated enzyme was 10-fold higher than normal, suggesting that the lysine at position 304 is important for binding the substrate. A slightly increased sensitivity to thermal denaturation was also observed.

Lamoril et al. (1995) numbered this mutation on the basis of the sequence described by Taketani et al. (1994). Subsequently the mutation was referred to as K404E (Lamoril et al., 1998) based on the initiation codon described by Delfau-Larue et al. (1994).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 2, 2019