4HMY,1W63


Conserved Protein Domain Family
AP1_sigma

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cd14831: AP1_sigma 
Click on image for an interactive view with Cn3D
AP-1 complex subunit sigma
AP-1 complex sigma subunit is part of the heterotetrameric adaptor protein (AP)-1 complex which consists of one large gamma-, one beta-, one mu-, and one sigma-subunit. AP complexes link the cytosolic domains of the cargo proteins to the protein coat that induces vesicle budding in the donor compartment during vesicle transport. In the case of AP-1 the coat protein is clathrin. AP-1 binds the phospholipid PI(4)P which plays a role in its localisation to the trans-Golgi network (TGN)/endosome. The sigma subunit is comprised of a single longin domain and plays a role in binding dileucine-based sorting signals.
Statistics
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PSSM-Id: 341435
Aligned: 45 rows
Threshold Bit Score: 218.196
Created: 9-Jan-2014
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
dileucine motifAP-1 gammaAP-1 mu
Conserved site includes 15 residues -Click on image for an interactive view with Cn3D
Feature 1:dileucine motif interface [polypeptide binding site]
Evidence:
  • Comment:based on the homology to AP2 complex
  • Comment:dileucine motif (D/E)xxxL(L/I) is one of the two sorting signals recognized by the AP complexes

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           ##    #                                                                  #
4HMY_S      3 HFILLFSRQGKLRLQKWYITLp-------------------dKERKKITREIVQIILSRghRTSSFVDWK-ELKLVYKRY 62  human
ELP94726    3 KFLLVVNRQGKVRLHKWYTSHs-------------------lKERERIIREVSNLILKRttTVSNFAEWR-DSTLVYRRY 62  Entamoeba invadens...
AAX70097    3 RYLLLISRQGKVRLAKWYVSIp-------------------nKEKTRIVRELCQTALGRsaRFSNVLELR-GSKYVCQRY 62  Trypanosoma brucei...
EPR64755    3 HFLLLVSRQGKVRLSRWYLPPscssqgpssgsegafaaglpmKERSELLREAASRVLQRsaKQCNVVEWRdDTKLVFKRY 82  Toxoplasma gondii ...
Q8LEZ8      3 HFVLLVSRQGKVRLTKWYSPYt-------------------qKERSKVIRELSGVILNRgpKLCNFIEWR-GYKVVYKRY 62  thale cress
ACO64801    3 HFALLFSRQGKVRLSKYYKPYs-------------------qKERAKMVKEVTTQILARpsKLCNVVEHR-NLKLVYRRY 62  Micromonas sp. RCC299
ADD38706    3 HLVTLFSRQGKVRLCKFYNANlak----------------seKDKTKIIKEMISNILSRtaSMSCFIEWR-DHTIVYKRY 65  salmon louse
Q54WW3      3 HFLLCFNRQSKVRLSKFYSTYt-------------------pTEKNRATREVMNQVLSRspKFCNFVQWR-EFTIVYQRF 62  Dictyostelium disc...
EAY11387    3 HFFLVFNRQGKARLSKWYEPQt-------------------kKSKDKITREVSNAILSRpaNFCTFIEWR-DRKLVYNRY 62  Trichomonas vagina...
EAY19413    3 QFVLMFNKAGKVRISKWYSAIs-------------------qREKNAITKEVTRLVLRRpqNHCQFVEWR-DSKIVYTRY 62  Trichomonas vagina...
Feature 1     ###                        ##  #    #####                                       
4HMY_S     63 ASLYFCCAIEn--qDNELLTLEIVHRYVELLDKYFgNVCELDIIFNFEKAYFILDEFIIGGEIQETSKKIAVKAIEDSDM 140 human
ELP94726   63 ANLYFVTCVDk--tDNELLALETIHRYVVILDKYFgSVSEIDIIFDFARAYVVLDEVINAGELIEAGPQIVLNEIEQQDE 140 Entamoeba invadens...
AAX70097   63 ASLYFIACIDk--qDNELAILEMIHHFVELLDRYFgNVCELDLIFNFHRAYFVLDEVILGGELEDTSKKSILRQIEMHEA 140 Trypanosoma brucei...
EPR64755   83 ASLFFIACVDs--nENALLTLEVIHHFVEILDRYFgNVCELDLIFNFHKAYYLLDEIICGGELQETSKKAVLRVMNAQDA 160 Toxoplasma gondii ...
Q8LEZ8     63 ASLYFCMCIDe--aDNELEVLEIIHHYVEILDRYFgSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARIISAQDQ 140 thale cress
ACO64801   63 ASLYFCLAVDd--tENELIVLEIIQHYVEILDKYFgNVCELDLIFNFHKAYYILDEVLVAGELQETSKKLIARLVADQDQ 140 Micromonas sp. RCC299
ADD38706   66 ASLYFLFVVDkygvDNELIILELIHRYVEVLDQYFgAVCELDIIYNFEKAHFLLDEMIMSGEIMEPSRKAVVKYVHFSDQ 145 salmon louse
Q54WW3     63 ASLFFVMVTDs--tDNELVTLESIQRFVVVLDIVFgNICELDLIYEFQRAYQVLDEFLLTGHLQESSSKEILRAINDAEG 140 Dictyostelium disc...
EAY11387   63 ASLYFVMCVDv--nDNESMMLDAIHFYVETLDAFFgNVREVDIIFGFHYAYMLLDEIILAGEFVESSRVNPIQSLVDQRE 140 Trichomonas vagina...
EAY19413   63 ASLYFLFAADa--sDNEIFVLDLIQFFVEALDQFFgNACEIDIIFSFYYVYMLLDEMILGGEVFETSVKNTIDSLVNQHR 140 Trichomonas vagina...
Feature 1          
4HMY_S    141 LQEVS 145 human
ELP94726  141 LHRSD 145 Entamoeba invadens IP1
AAX70097  141 AAEDT 145 Trypanosoma brucei brucei strain 927/4 GUTat10.1
EPR64755  161 LMEES 165 Toxoplasma gondii ME49
Q8LEZ8    141 LVEVA 145 thale cress
ACO64801  141 LVEAA 145 Micromonas sp. RCC299
ADD38706  146 FQEDE 150 salmon louse
Q54WW3    141 MEKSL 145 Dictyostelium discoideum AX4
EAY11387  141 AILAE 145 Trichomonas vaginalis G3
EAY19413  141 FIEET 145 Trichomonas vaginalis G3

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