5IHB,2ZG2,5J0B


Conserved Protein Domain Family
IgC2_CD33_d2_like

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cd20987: IgC2_CD33_d2_like 
Second immunoglobulin domain of Cluster of Differentiation (CD) 33 and related Siglecs; member of the C2-set of IgSF domains
The members here are composed of the second immunoglobulin (Ig) domain of Cluster of Differentiation (CD) 33 (also known as sialic-acid binding immunoglobulin type-lectin 3 (Siglec-3)) and related Siglecs. CD33, a Siglec family member, is a well-known immunotherapeutic target in acute myeloid leukemia (AML). It is an inhibitory sialoadhesin expressed in human leukocytes of the myeloid lineage and some lymphoid subsets, including natural killer (NK) cells. Siglecs are primarily expressed on immune cells and recognize sialic acid-containing glycan ligands. Siglecs are organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human Siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG (Siglec-4, myelin-associated glycoprotein), the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11. CD33 (Siglec-3) is the smallest Siglec member. It preferentially binds to alpha2-6- and alpha2-3-sialylated glycans and strongly binds to sialylated ligands on leukemic cell lines. Ig Superfamily (IgSF) domains can be divided into 4 main classes based on their structures and sequences: the Variable (V), Constant 1 (C1), Constant 2 (C2), and Intermediate (I) sets. This group includes CD33-related Siglecs which belong to the C2-set of IgSF domains. Unlike the C1-set, the C2-set structures do not have a D strand.
Statistics
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PSSM-Id: 409579
Aligned: 8 rows
Threshold Bit Score: 127.301
Created: 11-Dec-2019
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
  next features
Conserved site includes 5 residues -Click on image for an interactive view with Cn3D
Feature 1:Ig strand A [structural motif]
Evidence:
  • None

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        #####                                                                           
5IHB_A       128 PKILIPGTLEPGHSKNLTCSVsw---aCEQGtppIFSWLSAAPtslgp----------rtthsSVLIITPRPQDHGTNLT 194 human
2ZG2_A       128 PDIHFLEPLESGRPTRLSCSLpg---sCEAGpplTFSWTGNALspldp----------ettrsSELTLTPRPEDHGTNLT 194 human
5J0B_A       128 PKILIPGTLEPGHSKNLTCSVsw---aCEQGtppIFSWLSAAPtslgp----------rtthsSVLIITPRPQDHGTNLT 194 human
NP_001088138 135 PEISPTGDLIADKEVTVTCTApt---nCPGLs-pNFTWEGSVNtdniqnntsr-hqngtvtyrSNITFTPSPRHHNSSLT 209 Xenopus laevis
CAF33196     142 PNIDVPEEIVSDQSLDLTCYVpd---nCPDMs-pEIHWMYTDYlpdpvftpdqveegntavlsSTLTFTPKPMHNGQLLG 217 Danio rerio
AAH29896     146 PDIHFLEPLESGRPTRLSCSLpg---sCEAGpplTFSWTGNALspldp----------ettrsSELTLTPRPEDHGTNLT 212 Homo sapiens
EAW52587     147 PDVYIPETLEPGQPVTVICVFnwafkkCPAP---SFSWTGAALsprrtr--------pstshfSVLSFTPSPQDHDTDLT 215 Homo sapiens
AAI22605     141 PNIVVPPEVMAGTEVEVSCMVpd---nCPELh-pELSWLGHEGlgeptvlgrlreeegtwvqvSLLHFVPTRETNGHRLG 216 Bos taurus
Feature 1                           
5IHB_A       195 CQVKfagagvTTERTIQLN 213 human
2ZG2_A       195 CQMKrqgaqvTTERTVQLN 213 human
5J0B_A       195 CQVKfagagvTTERTIQLN 213 human
NP_001088138 210 CTVIyt--neSTNTNITLN 226 Xenopus laevis
CAF33196     218 CRVNfpnttyVYERLITLD 236 Danio rerio
AAH29896     213 CQMKrqgaqvTTERTVQLN 231 Homo sapiens
EAW52587     216 CHVDfsrkgvSAQRTVRLR 234 Homo sapiens
AAI22605     217 CQASfpnttlQFEGYASLD 235 Bos taurus

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