2J7N


Conserved Protein Domain Family
RdRP

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pfam05183: RdRP 
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RNA dependent RNA polymerase
This family of proteins are eukaryotic RNA dependent RNA polymerases. These proteins are involved in post transcriptional gene silencing where they are thought to amplify dsRNA templates.
Statistics
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PSSM-Id: 461574
Aligned: 257 rows
Threshold Bit Score: 291.01
Created: 22-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2J7N_A        135 LKPLMFEQ-GCRLTRRFGPDRFFEILIPSptstspsvppvvskqpaaveeviQWLTMGQHSLVGRQWRAFFAKDAGYRKp 213 
EES00122      354 FKGPYVENtRTHLQKIVGDDNVLIVKFADipdlenntd-----nlgiycqyySQVADDGIVLGLRRYRFFIHKDGGKTEk 428 
CBI28010      189 FKGPYLNKtRTHLQRVLGDENILLVKFAEdvtdrssln-----cstdsnasyNKIAREGIFVGLRQYRFFVFKDGGKEEk 263 
KRH74267      211 FKGPILQStRTHLQKTLGDDNVLLVKFAEdgsgknfrt-----haeeanalyGKFGKEGIRVGLRLYRFFVFKDGGNEEk 285 
O82189        228 LKGYFLENtGTHLHKVLGDDNVLTVRFDQlpkestyc--------dnpyskyKEIAKNGIMVGLRRYQFFVFKDGGKAEk 299  thale cress
O82190        228 FKGHLLENtGTHLHKVLGDDNVLTVKFDKvlgvetyc--------ndlystyKGIAKNGIMVGLRRYRFFVFKDGGKEEk 299  thale cress
O82188        223 LQGPLLEHtGTHLHKVLGDDNVLTVKFADvqksssty-------sidhyftyKGIAKNGIMIGLRRYQFFVFKDGGKEEk 295  thale cress
XP_009117512  248 FKGPLMENtGTHLHNVLGDENVLTVKFADvpgeatyc--------ndiystyKEIAKKGIMLGLRRYQFFVFKDGGKEEk 319  field mustard
VAI90085      409 FKGPYIENtRTSLQKVVGDDNVLVVNFSDisghtnagd-----nfetgchfyHHVFEDGIILGLRRYRFLIYKDGGRERr 483  durum wheat
XP_015697449  207 FKGPYVENtRTHLQKVIGDDNVLVVNFMEkpsdiktd-------fltycahyHKVAEDGIVLGLRHYRFFLYKDGGKDSk 279  malo sina
2J7N_A        214 lrefqlraedpkpiikERVHFFaetgitfrpdvfktrsvvpaeepveqrtefKVSQMLDWLLQLdNnTw-QPHLKLFSRI 292 
EES00122      429 lkeekkkeknkklspsVRCYFVrmesgwerd-------------ypykladyTVNQARRLFMHI-N-Na-PTVAKYLSRF 492 
CBI28010      264 kkn---------ptssVKCYFVfmess--------------------alsgkTVHEARCIFMHA-H-Mv-SSVAKYMARF 311 
KRH74267      286 qkdp--------tsstVKCYFVrmqsgcsade-----------gadyilsnkTVSEARTLFMHA-H-MllPNLNKYMARF 344 
O82189        300 kkrn--------stkqVKCYFIrtgstassdm-----------enpyilsgmSIHEARMHFMHV-H-Tl-PSPANYMARF 357  thale cress
O82190        300 kkdv--------stkgVKCYFIrtdstasidm-----------qnpyifagkSMHEARMHFMHV-N-Tl-SSLPNYMSRF 357  thale cress
O82188        296 kkdl--------stkkVKCYFIrtdstafydm-----------qnpyiltgkSIYEARMHFMHV-H-Ra-PTLANYMARF 353  thale cress
XP_009117512  320 kkdf--------sgkgVKCYFIrtdstssndm-----------gkpyifsgkSIHEARMHFMHV-H-Tl-PTLAKYMARF 377  field mustard
VAI90085      484 ikaekkkernkkctstVRCYFVrtecdwdkg-------------vpyilskrTVGDARKLFMHV-H-Tv-PSVAKYVARF 547  durum wheat
XP_015697449  280 mkeekrkeknkkctssVRCYFVrtesrwnmd-------------epyilsgkTIGQARGLFMHI-H-Ta-LTLPKYMSRF 343  malo sina
2J7N_A        293 QLGLSKTYAimtle--------------------phqirHHktdllspsgtgevMNDGVGRMSRSVAKRIR----DVLGL 348 
EES00122      493 ALILSKTIKldvdfskvnvkiid--depcreesgeiavqDGkd---------liHTDGTGLISVDLARNCPssifKGNFL 561 
CBI28010      312 SLILSKTVKldvdlstvniqridd-epgrdedghvvydeDWkp---------liLTDGTGFISEDLALRCPnnlcRGKYM 381 
KRH74267      345 SLILSKTLKlnidlttvsvqkip--deyckdangnimvdNEkp---------riLTDGTGFISRDLALLCPnnvyKGSNL 413 
O82189        358 SLILSKTKKlevdmteitvmqidd-ihchdqsnndvldkNGkp---------riHSDGTGYISEDLARMCPlnifKGKSM 427  thale cress
O82190        358 SLILSKTKTlevdmtgitfeqidd-ihchdqddkdvldkNGkp---------ciHSDGTGYISEDLARMCPvnifKGKSM 427  thale cress
O82188        354 SLILSKTKTlevdmtgitfdqidd-ihchdqdgkdvldkNKkp---------ciHSDGTGYISEDLARMCPlnifKGKCL 423  thale cress
XP_009117512  378 SLILSKTRKlevdtsriafqqidd-ihchdqnnndvldkNQkp---------ciHSDGTGYISEDLARMCPtdifKGKHV 447  field mustard
VAI90085      548 GLVLSKTITlldgealskidvvivddvpckdkngsivlkHRea---------liHTDGTGLISEDLAKKCPtdvfKGNLL 618  durum wheat
XP_015697449  344 ALIVSKTITldvdlsavrvelid--depcldehrnfvfrDGep---------liHTDGTGLISQDLALKCMssifKGKLL 412  malo sina
2J7N_A        349 g----------------------------D-V-------------------PSAVQGRF----GSAKGMWVIDvd---dT 373 
EES00122      562 kdavdsk----------------ghqhltTkH-------------------PLLIQFRMfhngYAVKGTLLADkrlpanT 606 
CBI28010      382 nn--------------------------gNsD-------------------PLLIQCRLfnngCAVKGTLLLNrklpprT 416 
KRH74267      414 ennciqeinnlveledmsnamgeaeqlstHeP-------------------PLLIQCRLfhmgHAIKGTLLVNrklpprT 474 
O82189        428 rsnni-------------------qgtcvQeP-------------------PLLIQIRMfndgSAVKGIFLLNknlppqT 469  thale cress
O82190        428 rsnniqsknl----------nfegqgpcgQeP-------------------PLLIQFRIfyngYAVKGTFLTNkklpprT 478  thale cress
O82188        424 rsesi-------------------qeacyQdP-------------------PLLIQFRMfydgYAVKGTFLLNkklcprT 465  thale cress
XP_009117512  448 rsdnmq------------------antygKeP-------------------PMLIQFRMfhygYAVKGTFLLNkklpprT 490  field mustard
VAI90085      619 r----------------------------IhDdsvdsked----qfdiddhPLLMQVRMfyngLAVKGTLLVVrklperT 666  durum wheat
XP_015697449  413 kpqvs-------------------kgkllKqQdivdcdesklmgynstteyPLLIQLRLfyngSAVKGTVLVDkrlspgT 473  malo sina
2J7N_A        374 gdedwIetYPSQRKWecDFv-------dKHqr-------------------tLEVRSVASELkSAGLNLQLLPVLEDRAr 427 
EES00122      607 -----IhiRPSMIKI--HGdens--fgeKSfn-------------------sLEVITTSYRPkRAFTSRFLISLLHYGR- 657 
CBI28010      417 -----IqiRPSMIKV--ETdpkl--sdtQTvn-------------------sVEINGTSNQPrRSYLSKYLIALLSYGG- 467 
KRH74267      475 -----IqvRPSMIKV--EKdps---vhmQSin-------------------sLEVVTTSNKPkRGYLSKHLIALLSFGG- 524 
O82189        470 -----VqvRPSMIKV--YKdknl--snfSTfn-------------------sLEVVTTSNPPkRAKLSKNLVALLSYGG- 520  thale cress
O82190        479 -----VqvRPSMIKV--YEdrtl--snlSTfn-------------------sLEVVTTSNPPrKARLSRNLVALLSYGG- 529  thale cress
O82188        466 -----VqvRPSMIKV--SKdpsl--snfSTfn-------------------aLEVVTTSNPPkRTKLSKNLVALLSYGG- 516  thale cress
XP_009117512  491 -----VqvRPSMVKV--SEdpal--ynfSTfn-------------------sLEVVTTSNPPrRTKLSRNLVALLSYGG- 541  field mustard
VAI90085      667 -----IhiRPSMIKV--NSdpsl--sggHSfn-------------------sLEIVSTSNRPkRALTSRFLITLLQYGG- 717  durum wheat
XP_015697449  474 -----IliRPSMVKI--KTdpklssihsVNsfeivsarnakkslsdvqfvnsFEIVSTSNRPrRTSTSRILIALLHYGG- 545  malo sina
2J7N_A        428 dkvKMRQAIGDRLINDLQRQFSEQKHAlnrpvefrqwvyesyssratrvshgrvpflaglPDSQEETLNFLMN-SGFDPK 506 
EES00122      658 ---VREEFFLDLLRNALEDVNNARHRPrnsle------------------------vafnHADLDDSMSARMIlSGIQPE 710 
CBI28010      468 ---VPNEYFMNLLKDALEDAPSVQSSKraalr------------------------vslrFGEMDDSIVTRMIlSGI-PI 519 
KRH74267      525 ---VPNEFFMDLLRSNMEDANHVYSNKrsalr------------------------asinCGEKDEYNAAEMIlCGI-PL 576 
O82189        521 ---VPNDFFLDILLNTLEKKKTIFFKVraagk------------------------aalhYGNMDDKNALQMImAGI-PL 572  thale cress
O82190        530 ---VPNDFFLNILRNTLEESKTIFYSEraafk------------------------aainYG--DDQYTADMIlVGI-PL 579  thale cress
O82188        517 ---IPNEFFLDILLNTLEESKSIFYNKraaln------------------------aalnYGEMDDQNAAQMIlVGI-PL 568  thale cress
XP_009117512  542 ---VPDEFFLDILRSTLEESKTVFDNKraavr------------------------aarnYGDMDEYNALQMImSGI-PL 593  field mustard
VAI90085      718 ---VPADYFMELLGKALKDVEKARHKTrdsle------------------------vafnHGDMDDLMSARMIlSGIRPE 770  durum wheat
XP_015697449  546 ---VPEEFFMELLQNAIEDAENARFDYgdaln------------------------iafsYADMEDSMSARMIlAGI-PL 597  malo sina
2J7N_A        507 kqKYLQDIAWDLQKRKcDTLKSKLNIRVGRSAYIYMIADFWGVLEENEVHVGFsS-KfrdeeesftllsDCD-VLVARSP 584 
EES00122      711 deAYLQSQLALMAKVE-RKGLKEGRIPIDDTYYLMGTTDPTGTLKRDQVCIILdNgQ------------LSGkVLVYKHP 777 
CBI28010      520 dePFLHHCLSFMVNEE-RKGLRVGKLPVNDCFYLMGTADPTGTLKSDEVCIILdHgQ------------VQGrVLVYKHP 586 
KRH74267      577 dePFLKHHLSRFAREE-KKKLRGGKLYMPDCFYLMGTVDPTGHLKKNQVCIIHeNsQ------------IVGdVLVYRNP 643 
O82189        573 dePYLKHYLSKLLKLE-KDDLKAGKLPIDESYYLMGTVDPTGELKEDEVSGLA----------------KSQdVLVYRNP 635  thale cress
O82190        580 dePYLKDRLSYLLKTE-RNALKAGRFPIDESYYIMGTVDPTGELKENEICVILhSgQ------------ISGdVLVYRNP 646  thale cress
O82188        569 dePHLKNYLSILLKTE-KNDLKAGKLPVTESYYLMGTVDPTGALKEDEVCVILeSgQ------------ISGeVLVYRNP 635  thale cress
XP_009117512  594 dePHLKDHLSILLNTE-KNDLKAGKLLVTESYYLMGTVDPTGKLKQNEVCVILeSgQ------------ISGdVLVYRNP 660  field mustard
VAI90085      771 deAYLQHQLTTMTKEE-REGFKQGRLPVDQCYYLMGTTDPTGTLKPHEVCVILdHgP------------ISGeVLVYRHP 837  durum wheat
XP_015697449  598 deLYLQSRLTFMAKQE-RKGIKEGKIPIDNCYYLMGTADPTGILAPNEVCVILdNgQ------------LSGdVLVYKHP 664  malo sina
2J7N_A        585 AHFPSDIQRVRAvfK-PELH----SLKDVIIFSTKGDVPLAKKLSGGDYDGDMAWVCWDPE-IvdgF---Vn---aEMp- 651 
EES00122      778 GLHFGDIHILTAt-YiDGLEkivgNSKYAIFFPTCGPRSLADEMANSDFDGDLYWVSRNPQlLe-gFtkqRkp--wVRri 853 
CBI28010      587 GLHFGDIHVLNAt-YvEALEefvgNAKYAIFFPIKGPRSLADEMANSDFDGDMYWVSRNQQlLq-yFr-aSep--wMRkr 661 
KRH74267      644 GLHFGDIHKMDAt-YvKELEsyvgHSKYGIFFPRVGTRSVADEIAGGDFDGDTYWVSNHPQlLq-yFr-kGdp--wIEns 718 
O82189        636 GLHFGDIHILKAt-YvKSLEqyvgNSKYGVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKlLe-hYk-pSep--wVSss 710  thale cress
O82190        647 GLHFGDIHVLKAt-YvKALEdyvgNAKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKlLe-hFk-pSep--wVSss 721  thale cress
O82188        636 GLHFGDIHILKAt-YvKALEeyvgNSKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPElLe-nFk-pSep--wVSlt 710  thale cress
XP_009117512  661 GLHFGDIHVLKAt-YvKALEeyvgNSKYGVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKlLe-hYk-pSep--wVSss 735  field mustard
VAI90085      838 GLHFGDIHVLTAt-YsEAIQdfvgDSKYAILFPVSGPRSLADEMAGGDFDGDMYWVSRNPQlLk-yFk-pSep--wDPrn 912  durum wheat
XP_015697449  665 GLHFGDIHVLKAt-YiPGLEevvgCSKYVILFPTTGQRSLADEMANSDFDGDIFWISINPKlLe-hFk-pSkawewEQai 741  malo sina
2J7N_A        652 --------LEP-DLSrylkkdkttfkqlmashgtgsaakeqttydmIQKSFHFalQPNFLGMCTNYKErLCYi------- 715 
EES00122      854 qpt-ktelKKPqDYTgpkle---------------------sllfhEFLRARFt-PSYVLGAASNCWL-ALMdrlltg-- 907 
CBI28010      662 str-hvpsKRPtDFSpdele---------------------helfqLFLTTRFq-TSSAIGMAADNWL-VFMdrlltlr- 716 
KRH74267      719 vpl-dssvKKPsEFSpeele---------------------eelfrLFLKTRFq-PSYAMGMSENSWM-ALMdrlltln- 773 
O82189        711 prskiytgRQPsELSpeqle---------------------eelfkIFLKTGFs-PSSVIGQAADSWL-AIMdrfltlg- 766  thale cress
O82190        722 kpskiycgRKPsELSeeele---------------------eelfkMFLKARFc-KRDVIGMAADCWL-GIMdpfltlg- 777  thale cress
O82188        711 ppsksnsgRAPsQLSpeele---------------------eelfeMFLTAGFh-ASNVIGIAADSWL-TIMdrflilg- 766  thale cress
XP_009117512  736 ppskiytgRKPsELSpemle---------------------eelfrLFLKARFh-SSNVIGAAADSWL-RIMdqfltlgd 792  field mustard
VAI90085      913 ppr-kakqEKPqDYDeskle---------------------hilfrEFFRIRFt-PSYVLGAAADCWL-VYMdrlltce- 967  durum wheat
XP_015697449  742 tpk-eakqMGPqDFNesele---------------------rllfhEFLKARFa-PSYALATASNNWL-VYMdrlltd-- 795  malo sina
2J7N_A        716 --------nNSVSNKPAIILSSLVGNLVDQSKQGIvfnEASwaqlrrELlGgalSLP--DPMYKsdSWlgrgeP----TH 781 
EES00122      908 ---gvpkseRQAIKKKMLDLVDIYYLALDAPKEGN---KIT------VPgE---LKVkkYPHFMerDEk----KsytsTS 968 
CBI28010      717 ---ddcsdeKECLKRKMLELTDIYYDALDAPKSGM---KVN------VSkE---LKAekFPHFMgrESsy------hsTS 775 
KRH74267      774 --nctneneKERVKENMLKLIDIYYEALDAPKSGR---KVQ------VPnD---LIAelFPHYMekDKsf------tsTS 833 
O82189        767 ---denvkeKAEMKKKMLKLTDIYYDAIDAPKTGT---EVN------LPlD---VKVdlFPHYMerNKtf------ksTS 825  thale cress
O82190        778 ---desakeKYERKKNILKLIDIYYDALDAPKKGA---KVD------LPpD---LEIknFPHYMerDPk----RdfrsTS 838  thale cress
O82188        767 ---ddraeeKAEMKKKMLELIDIYYDALDAPKKGD---KVY------LPnK---LKPdiFPHYMerDKkf------qsTS 825  thale cress
XP_009117512  793 drvketaerKSKMVKTMLKAIDIYYDALDAPKNGA---KVD------LPlD---LKFdsFPHYMerKNk----KifksTS 856  field mustard
VAI90085      968 --vqedkkeWESIKAKMLELVDIYYEALDAPKSGN---KIT------MPrH---LRVevYPHFMegKGf---tPpytsTS 1030 durum wheat
XP_015697449  796 ---pvdeseKELIKEKMLKLVDLYYVALDAPKSGK---KVN------IPsD---LMVkqYPHFMgrSSsy------hsSS 854  malo sina
2J7N_A        782 IIDYLKFSI 790 
EES00122      969 VLGKIYDEV 977 
CBI28010      776 ILGQIYDAV 784 
KRH74267      834 ILGLIYDEV 842 
O82189        826 ILGLIFDTV 834  thale cress
O82190        839 ILGLIFDTV 847  thale cress
O82188        826 ILGLIFDFV 834  thale cress
XP_009117512  857 ILGLIYDTV 865  field mustard
VAI90085     1031 VLGKIYDLA 1039 durum wheat
XP_015697449  855 ILGKLYDKA 863  malo sina
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