Triacylglycerols in adipose tissue are converted into free fatty acids and glycerol for release into the bloodstream in response to hormonal signals. A hormone-sensitive lipase initiates the process.
Peripheral tissues gain access to the lipid energy reserves stored in adipose tissue through three stages of processing. First, the lipids must be mobilized. In this process, triacylglycerols are degraded to fatty acids and glycerol, which are released from the adipose tissue and transported to the energy-requiring tissues. Second, at these tissues, the fatty acids must be activated and transported into mitochondria for degradation. Third, the fatty acids are broken down in a step-by-step fashion into acetyl CoA, which is then processed in the citric acid cycle.

Triacylglycerols in adipose tissue are converted into free fatty acids and glycerol for release into the bloodstream in response to hormonal signals. A hormone-sensitive lipase initiates the process.
Glycerol formed by lipolysis is absorbed by the liver and phosphorylated, oxidized to dihydroxyacetone phosphate, and then isomerized to glyceraldehyde 3-phosphate. This molecule is an intermediate in both the glycolytic and the gluconeogenic pathways.

Hence, glycerol can be converted into pyruvate or glucose in the liver, which contains the appropriate enzymes. The reverse process can take place by the reduction of dihydroxyacetone phosphate to glycerol 3-phosphate. Hydrolysis by a phosphatase then gives glycerol. Thus, glycerol and glycolytic intermediates are readily interconvertible.
Eugene Kennedy and Albert Lehninger showed in 1949 that fatty acids are oxidized in mitochondria. Subsequent work demonstrated that they are activated before they enter the mitochondrial matrix. Adenosine triphosphate (ATP) drives the formation of a thioester linkage between the carboxyl group of a fatty acid and the sulfhydryl group of CoA. This activation reaction takes place on the outer mitochondrial membrane, where it is catalyzed by acyl CoA synthetase (also called fatty acid thiokinase).

Paul Berg showed that the activation of a fatty acid is accomplished in two steps. First, the fatty acid reacts with ATP to form an acyl adenylate. In this mixed anhydride, the carboxyl group of a fatty acid is bonded to the phosphoryl group of AMP. The other two phosphoryl groups of the ATP substrate are released as pyrophosphate. The sulfhydryl group of CoA then attacks the acyl adenylate, which is tightly bound to the enzyme, to form acyl CoA and AMP.


These partial reactions are freely reversible. In fact, the equilibrium constant for the sum of these reactions is close to 1. One high-transfer-potential compound is cleaved (between PPi and AMP) and one high-transfer-potential compound is formed (the thioester acyl CoA). How is the overall reaction driven forward? The answer is that pyrophosphate is rapidly hydrolyzed by a pyrophosphatase, and so the complete reaction is

This reaction is quite favorable because the equivalent of two molecules of ATP is hydrolyzed, whereas only one high-transfer-potential compound is formed. We see here another example of a recurring theme in biochemistry: many biosynthetic reactions are made irreversible by the hydrolysis of inorganic pyrophosphate.
Another motif recurs in this activation reaction. The enzyme-bound acyl-adenylate intermediate is not unique to the synthesis of acyl CoA. Acyl adenylates are frequently formed when carboxyl groups are activated in biochemical reactions. Amino acids are activated for protein synthesis by a similar mechanism (Section 29.2.1), although the enzymes that catalyze this process are not homologous to acyl CoA synthetase. Thus, activation by adenylation recurs in part because of convergent evolution.
Fatty acids are activated on the outer mitochondrial membrane, whereas they are oxidized in the mitochondrial matrix. A special transport mechanism is needed to carry long-chain acyl CoA molecules across the inner mitochondrial membrane. Activated long-chain fatty acids are transported across the membrane by conjugating them to carnitine, a zwitterionic alcohol. The acyl group is transferred from the sulfur atom of CoA to the hydroxyl group of carnitine to form acyl carnitine. This reaction is catalyzed by carnitine acyltransferase I (also called carnitine palmitoyl transferase I), which is bound to the outer mitochondrial membrane.

The entry of acyl carnitine into the mitochondrial matrix is mediated by a translocase. Carnitine returns to the cytosolic side of the inner mitochondrial membrane in exchange for acyl carnitine.
A number of diseases have been traced to a deficiency of carnitine, the transferase or the translocase. The symptoms of carnitine deficiency range from mild muscle cramping to severe weakness and even death. The muscle, kidney, and heart are the tissues primarily affected. Muscle weakness during prolonged exercise is an important characteristic of a deficiency of carnitine acyl transferases because muscle relies on fatty acids as a long-term source of energy. Medium-chain (C8-C10) fatty acids, which do not require carnitine to enter the mitochondria, are oxidized normally in these patients. These diseases illustrate that the impaired flow of a metabolite from one compartment of a cell to another can lead to a pathological condition.
Fatty acids are degraded by the repetition of a four-reaction sequence consisting of oxidation, hydration, oxidation, and thiolysis.
The first reaction in each round of degradation is the oxidation of acyl CoA by an acyl CoA dehydrogenase to give an enoyl CoA with a trans double bond between C-2 and C-3.

As in the dehydrogenation of succinate in the citric acid cycle, FAD rather than NAD+ is the electron acceptor because the value of ΔG for this reaction is insufficient to drive the reduction of NAD+. Electrons from the FADH2 prosthetic group of the reduced acyl CoA dehydrogenase are transferred to a second flavoprotein called electron-transferring flavoprotein (ETF). In turn, ETF donates electrons to ETF:ubiquinone reductase, an iron-sulfur protein. Ubiquinone is thereby reduced to ubiquinol, which delivers its high-potential electrons to the second proton-pumping site of the respiratory chain (Section 18.3.3). Consequently, 1.5 molecules of ATP are generated per molecule of FADH2 formed in this dehydrogenation step, as in the oxidation of succinate to fumarate (Section 18.3.2).

The next step is the hydration of the double bond between C-2 and C-3 by enoyl CoA hydratase.

The hydration of enoyl CoA is stereospecific. Only the l isomer of 3-hydroxyacyl CoA is formed when the trans-Δ2 double bond is hydrated. The enzyme also hydrates a cis-Δ2 double bond, but the product then is the d isomer. We shall return to this point shortly in considering how unsaturated fatty acids are oxidized.
The hydration of enoyl CoA is a prelude to the second oxidation reaction, which converts the hydroxyl group at C-3 into a keto group and generates NADH. This oxidation is catalyzed by l-3-hydroxyacyl CoA dehydrogenase, which is specific for the l isomer of the hydroxyacyl substrate.

The preceding reactions have oxidized the methylene group at C-3 to a keto group. The final step is the cleavage of 3-ketoacyl CoA by the thiol group of a second molecule of CoA, which yields acetyl CoA and an acyl CoA shortened by two carbon atoms. This thiolytic cleavage is catalyzed by β-ketothiolase.

| Step | Reaction | Enzyme |
|---|---|---|
| 1 | Fatty acid + CoA + ATP acyl CoA + AMP + PPi | Acyl CoA synthetase [also called fatty acid thiokinase and fatty acid:CoA ligase (AMP)] |
| 2 | Carnitine + acyl CoA acyl carnitine + CoA | Carnitine acyltransferase (also called carnitine palmitoyl transferase) |
| 3 | Acyl CoA + E-FAD → trans- Δ2 -enoyl CoA + E-FADH2 | Acyl CoA dehydrogenases (several isozymes having different chain-length specificity) |
| 4 | trans-Δ2 -Enoyl CoA +H2O l-3-hydroxyacyl CoA | Enoyl CoA hydratase (also called crotonase or 3-hydroxyacyl CoA hydrolyase) |
| 5 | l -3-Hydroxyacyl CoA + NAD+ 3-ketoacyl CoA + NADH + H+ | l-3-Hydroxyacyl CoA dehydrogenase |
| 6 | 3-ketoacyl CoA + CoA acetyl CoA + acyl CoA (shortened by C2) | β-Ketothiolase (also called thiolase) |
Two-carbon units are sequentially removed from the carboxyl end of the fatty acid.
We can now calculate the energy yield derived from the oxidation of a fatty acid. In each reaction cycle, an acyl CoA is shortened by two carbon atoms, and one molecule each of FADH2, NADH, and acetyl CoA is formed.

The degradation of palmitoyl CoA (C16-acyl CoA) requires seven reaction cycles. In the seventh cycle, the C4-ketoacyl CoA is thiolyzed to two molecules of acetyl CoA. Hence, the stoichiometry of oxidation of palmitoyl CoA is

Approximately 2.5 molecules of ATP are generated when the respiratory chain oxidizes each of the 7 molecules of NADH, whereas 1.5 molecules of ATP are formed for each of the 7 molecules of FADH2 because their electrons enter the chain at the level of ubiquinol. Recall that the oxidation of acetyl CoA by the citric acid cycle yields 10 molecules of ATP. Hence, the number of ATP molecules formed in the oxidation of palmitoyl CoA is 10.5 from the 7 molecules of FADH2, 17.5 from the 7 molecules of NADH, and 80 from the 8 molecules of acetyl CoA, which gives a total of 108. The equivalent of 2 molecules of ATP is consumed in the activation of palmitate, in which ATP is split into AMP and 2 molecules of Pi. Thus, the complete oxidation of a molecule of palmitate yields 106 molecules of ATP.