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In this example of site-specific recombination, the lambda integrase enzyme binds to a specific “attachment site” DNA sequence on each chromosome, where it makes cuts that bracket a short homologous DNA sequence. The integrase then switches the partner strands and reseals them to form a heteroduplex joint that is seven nucleotide pairs long. A total of four strand-breaking and strand-joining reactions is required; for each of them, the energy of the cleaved phosphodiester bond is stored in a transient covalent linkage between the DNA and the enzyme, so that DNA strand resealing occurs without a requirement for ATP or DNA ligase.
