Molecular Genetic Pathogenesis
Nemaline myopathy (NM) is a disorder of thin filament proteins, and thus it is necessary to understand the normal interactions of these proteins to understand the pathogenic mechanisms underlying NM.
Alpha-actinin, the major protein component of nemaline bodies, forms diagonal cross-connections between the thin filaments, which are anchored via a network of interactions between α-actinin, actin, nebulin, and other proteins. The myosin-containing thick filaments interdigitate with the thin filaments, which are made up of a double-stranded helix of globular actin monomers (e.g., F actin) associated with a single molecule of nebulin. At over 770 kd in size, nebulin ranks as one of the largest known proteins. The central portion contains up to 185 tandem repeats of 35 residues, each of which likely binds a single actin monomer. The carboxy terminus is unique and is embedded in the Z-lines. Along the length of the thin filaments, the tropomyosins and troponins together form a complex of proteins responsible for control of contraction by regulating the interactions of actin and myosin.
At rest, tropomyosin dimers lie along the actin filament in a potential myosin-binding site, sterically inhibiting myosin-actin interactions. Tropomyosin position and movement are controlled by the troponin complex consisting of three subunits: TN-I (inhibitory), TN-T (tropomyosin-binding), and TN-C (calcium-binding). When muscle is stimulated, intracellular calcium levels increase to a critical level and bind to TN-C. This releases the inhibitory effect of TN-I so that tropomyosin moves into the groove between actin helices, unmasking the myosin binding sites and triggering the contraction cycle.
Mutations in the genes encoding various components of the thin filament likely disrupt the orderly assembly of sarcomeric proteins and the functional interaction between the thin and thick filament during muscle contraction. Tissue culture studies of disease-causing mutations in ACTA1 suggest that mutant actin has a dominant negative effect on thin filament assembly and function and results in abnormal folding, altered polymerization, and aggregation of mutant actin isoforms [Ilkovski et al 2004]. Some of these effects are mutation-specific, and likely result in variations in the severity of muscle weakness seen in individuals. A combination of these effects contributes to the common pathologic hallmarks of NM, namely intranuclear and cytoplasmic rod formation, accumulation of thin filaments, and myofibrillar disorganization.
The
TPM3 p.Met9Arg mutation, associated with
autosomal dominant childhood-onset NM, has now been studied extensively in vitro and in vivo, providing initial insights into the pathogenesis of NM. This
mutation occurs in the N-terminal structure of α-tropomyosin
SLOW, which is implicated in binding actin, troponin T, and tropomodulin, and in head-tail interactions leading to the coiled-coil dimeric structure of tropomyosin. When expressed in rat adult cardiac myocytes, the mutant protein was incorporated into sarcomeres and the contractile response to Ca
2+ was diminished; however, there was no rod formation [
Michele et al 1999]. When expressed in
Escherichia coli, the p.Met9Arg mutant had a 30- to 100-fold reduced affinity for actin binding and reduced activation of actomyosin S1 ATPase [
Moraczewska et al 2000]. When the p.Met9Arg
mutation was introduced into a transgenic mouse line, rod formation occurred in all muscles, with onset of weakness at age five to six months, mimicking late-childhood onset in humans [
Corbett et al 2001]. The percentage of rods varied significantly between different muscle groups despite uniform expression of the mutant transgene, reflecting the same variability of muscle involvement as seen in humans with NM. The mutant
TPM3 is expressed, suggesting a
dominant negative effect; an imbalance in other specific
TPM isoform levels within NM muscle may contribute to disease pathogenesis [
Corbett et al 2005]. Fiber-typing abnormalities in the mouse model appear to be related to a disruption in the developmental maturation of different muscle fiber types. Interestingly the
TPM3 nemaline mouse has compensatory hypertrophy of muscle fibers compared to wild type that may contribute to delayed onset of muscle weakness [
Corbett et al 2001,
Nair-Shalliker et al 2004]. Fiber hypertrophy occurs occasionally in individuals with NM and tends to correlate with a milder
phenotype [North, unpublished observations], raising the possibility that exercise and hypertrophic agents may influence the course of the disease.
ACTA1
Normal allelic variants. The ACTA1 gene consists of seven exons.
Pathologic allelic variants. More than 140 different mutations have now been identified in the ACTA1 gene. There are approximately 80 mutations listed in the Human Gene Mutation Database and more than 50 novel unpublished mutations [Laing, personal communication; North & Laing 2008]. The vast majority of these mutations are missense (see Table A: locus-specific databases and HGMD).
Normal gene product. Actin, alpha skeletal muscle has vital roles in cell integrity, structure, and motility. Muscle contraction results from the force generated between the thin filament protein actin and the thick filament protein myosin. See Molecular Genetic Pathogenesis.
Abnormal gene product. See Molecular Genetic Pathogenesis.
Both hemizygous and homozygous null mice show an increase in cardiac and vascular ACTA1 mRNA in skeletal muscle. No skeletal ACTA1 mRNA is present in null mice [Crawford et al 2002].
NEB
Normal allelic variants. The NEB gene contains 183 exons in a 249-kb genomic region. Exon numbering varies in the literature because some exons are differentially expressed.
Pathologic allelic variants. See
Table 3. To date, 64 different
mutations in 55 families have been identified in
NEB [
Pelin et al 1999,
Pelin et al 2002,
Lehtokari et al 2006].
The majority of mutations are frameshifts caused by small deletions or insertions or point mutations causing premature stop codons or abnormal splicing. In addition, a 2502-bp deletion in NEB appears to be a common cause of NM in Ashkenazi Jewish families, with a carrier frequency of approximately 1:100 [Anderson et al 2004].
Normal gene product. Nebulin is a giant protein (600-900 kd) component of the cytoskeletal matrix.
Abnormal gene product. Most NEB mutations are predicted to result in truncated or internally deleted proteins. See Molecular Genetic Pathogenesis.
TPM3
Normal allelic variants. The TPM3 gene contains 13 exons. Multiple transcript variants encoding different isoforms have been found for this gene.
Pathologic allelic variants. See
Table 4.
Laing et al [1995] identified a p.Met9Arg substitution in the N-terminal end of tropomyosin
SLOW in a
kindred with dominantly inherited NM.
Wattanasirichaigoon et al [2002] reported a person who was compound heterozygous for a
point mutation and splice site
mutation. A further example of
recessive TPM3-related NM was documented by
Tan et al [1999], who identified a homozygous p.Gln32X
nonsense mutation in an infant with extremely delayed motor development.
Normal gene product. Tropomyosin alpha-3 chain is expressed mostly in slow, type 1 muscle fibers. Tropomyosin isoforms are components of the thin filaments of the sarcomere, acting to mediate the effect of calcium on actin-myosin interaction.
Abnormal gene product. In terms of understanding disease pathogenesis in NM, the best characterized is tropomyosin NM. Tissue culture and animal models have been developed for the p.Met9Arg mutation in TPM3 identified by Laing et al [1995]. This mutation was predicted to affect the N-terminal structure of the α-tropomyosin, which is implicated in binding actin and troponin T and for head-tail interactions leading to the coiled-coil dimeric structure of tropomyosin, which polymerizes along the entire length of the thin filament. In vitro studies suggest that the mutant TPM3 exerts a dominant negative effect and alters the Ca2+-activated force production, hastening relaxation of mutant tropomyosin and shifting the force-frequency relationship in skeletal muscle [Michele et al 1999, Michele et al 2002]. In addition, the p.Met9Arg mutation reduced the affinity of the mutant tropomyosin for actin, destabilized the tropomyosin coiled-coil, and would be expected to impair end-to-end association between tropomyosins in the thin filament [Moraczewska et al 2000].
Corbett and colleagues introduced the p.Met9Arg mutation into a transgenic mouse line, resulting in rod formation in all muscles and a late-onset (age five to six months) skeletal muscle weakness [Corbett et al 2001]. The percentage of rods varied significantly among different muscle groups despite uniform expression of the mutant transgene, reflecting the variability of muscle involvement seen in humans with NM. Preliminary studies in the mouse confirm that the mutant TPM3 is expressed and that there is an imbalance in other specific TPM isoform levels within NM muscle that may contribute to disease pathogenesis. Fiber typing abnormalities in the mouse model appear to be related to a disruption in the developmental progression of the different muscle fiber types.
TPM2
Normal allelic variants. The TPM2 gene contains ten exons.
Pathologic allelic variants. Donner et al [2002] identified two different heterozygous missense mutations in TPM2.
Normal gene product. Tropomyosins are actin-filament-binding proteins expressed in skeletal, cardiac, and smooth muscle that act to regulate the calcium-sensitive interaction of actin and myosin during muscle contraction.
Abnormal gene product. The two missense mutations identified to date in TPM2 are speculated to affect the actin-binding properties of tropomyosin beta chain.
TNNT1
Normal allelic variants. The gene encoding troponin T, slow skeletal muscle consists of 14 exons.
Pathologic allelic variants. See
Table 5.
Johnston et al [2000] identified a homozygous stop
codon mutation, predicted to truncate the protein at amino acid 180, in infants with the Amish form of NM.
Normal gene product. The tropomyosin-troponin complex regulates the calcium sensitivity of the contractile apparatus of the sarcomere, linking excitation to contraction in skeletal muscle. The troponin T part of the troponin complex regulates its binding to tropomyosin.
Abnormal gene product. In the Amish form of NM, which is caused by a homozygous p.Glu180X nonsense mutation in TNNT1, troponin T (TnT), slow skeletal muscle, slow TnT is completely absent from slow fibers. Slow TnT confers greater calcium sensitivity than does fast TnT in single fiber contractility assays. Despite the lack of slow TnT, individuals with Amish NM have normal muscle strength at birth. The postnatal onset and infantile progression of Amish NM correspond to a down-regulation of cardiac and embryonic splice variants of fast TnT in normal developing human skeletal muscle, suggesting that the fetal TnT isoforms complement slow TnT.
CFL2
Normal allelic variants. The gene encoding the muscle isoform of cofilin (CFL2) on chromosome 14q12 consists of five exons [Thirion et al 2001].
Pathologic allelic variants. See
Table 6. The
CFL2 gene has been directly implicated in human disease in only one family to date [
Agrawal et al 2007]. A homozygous missense change (c.103C>A) was found in two sisters from a consanguineous family of Middle Eastern origin. While the possibility remains that this is a chance association, there is good supportive evidence that this change is pathogenic. The associated LOD score in the family was 1.9, the change was not found in over 200 healthy individuals (almost half of whom were ethnically matched) and reduced cofilin 2 levels were found in patient muscle biopsies by
Western blot and
immunohistochemistry. Both children had typical clinical features of a
congenital myopathy that included
congenital hypotonia, delayed early milestones, frequent falls and an inability to run. Nemaline bodies were seen on muscle biopsy at age two years in one child, together with occasional minicore lesions and actin filament accumulations. A muscle biopsy of the older child at age four years showed nonspecific abnormalities.
Agrawal et al [2007] directly sequenced CFL2 in 113 unrelated patients with nemaline myopathy of unknown genetic basis and 58 patients with other muscle pathologies. They found disease-associated mutations in only the single family reported above and concluded that CFL2 is a rare cause of nemaline myopathy, accounting for fewer than 1% of patients.
Normal gene product. The cofilins, together with actin depolymerization factor (ADF), form a group of proteins that catalyze the depolymerization of actin filaments in a pH-dependent manner. The CFL2 gene encodes the muscle isoform of cofilin. CFL2 was considered a good candidate for nemaline myopathy because of its role in actin filament turnover in muscle.
Abnormal gene product. The c.103C>A change is predicted to substitute threonine in place of a highly conserved alanine 35 residue. In addition the mutant protein tended to precipitate abnormally when expressed in bacterial cells, suggesting that the mutation causes protein misfolding. Molecular modeling has suggested that the mutation may disrupt a beta sheet directly adjacent to the nuclear localization signal.