Molecular Genetic Pathogenesis
Ciliary defects. Defects in cilia or intraflagellar transport (IFT) have been associated with several human disorders including Bardet-Biedl syndrome (BBS), Kartagener syndrome (see Primary Ciliary Dyskinesia), autosomal dominant polycystic kidney disease, and nephronophthisis.
Cilia protrude from almost all vertebrate cells and extend from basal bodies within the cell. Cilia are classified as primary cilia or motile cilia. Primary cilia have a 9+0 axonemal microtubule formation, are usually immotile, lack dynein arms, and are hypothesized to function as sensory organelles [Pazour & Witman 2003]. Motile cilia have a 9+2 axonemal microtubule formation and are usually involved in generating flow or movement. The assembly and maintenance of cilia depend on intraflagellar transport that moves particles from the basal body along the microtubular structure of the ciliary axoneme to the tip.
Figure 1. Schematic diagram of the primary cilium illustrating the concept of intraflagellar transport (IFT) and the component parts therein. The protein cargo is manufactured in the Golgi apparatus and carried by vesicles to the cell membrane where receptor proteins may also be picked up and translocated to the IFT particles docked at the transition zone. Under the influence of the kinesin motors, the IFT/cargo assembly is transported along the microtubular axoneme (anterograde transport). At the tip, cargo may be unloaded, further proteins/molecules and kinesin itself is loaded and carried back down the axoneme (retrograde transport) facilitated by the dynein molecular motor. In this way proteins are destined for degradation or recycling.
A significant leap in understanding the molecular pathogenesis of BBS emerged from the discovery of the
BBS8 gene, which led to the proposal of ciliary involvement in BBS [
Ansley et al 2003]. Compelling evidence was subsequently provided from comparative genomic studies that identified all known
BBS orthologues among
genes present exclusively in ciliated organisms [
Avidor-Reiss et al 2004,
Li et al 2004]. All known
C.elegans bbs orthologues are exclusively expressed in a subset of ciliated sensory neurons [
Ansley et al 2003,
Fan et al 2004,
Li et al 2004], and
bbs-7 and
bbs-8 mutants have structural and functional ciliary defects [
Blacque et al 2004]. Furthermore, several BBS proteins localize to the centrosome (the "microtubule organizing center" of the cell) and basal body (a product of the centrosome that is positioned at the base of the cilium and required for cilia formation) [
Ansley et al 2003,
Kim et al 2004,
Li et al 2004,
Kim et al 2005]. A study of the BBS4 protein suggested that it may act as an adaptor protein facilitating the microtubule-dependent intracellular transport within the cilium or in the cytosol [
Kim et al 2004]. A summary of the localization and putative role of the BBS proteins is illustrated in .
Pathogenesis of anosmia. Studies of mouse knockouts of Bbs1 [Kulaga et al 2004], Bbs2 [Nishimura et al 2004], Bbs4 [Kulaga et al 2004, Mykytyn et al 2004] and Bbs6 [Fath et al 2005, Ross et al 2005] have provided further support for ciliary involvement in BBS. Mice display sperm flagellation defects, retinal degeneration likely secondary to defective IFT, as well as olfactory dysfunction presenting as partial or complete anosmia with diminution of the ciliated olfactory epithelium. Humans with BBS were subsequently identified with partial or complete anosmia [Kulaga et al 2004, Iannaccone et al 2005].
Pathogenesis of rod-cone dystrophy. Defects in the transport of phototransduction proteins from the inner to the outer segments of photoreceptors leads to cell death and is thought to underlie the pathogenesis of retinitis pigmentosa in BBS [Nishimura et al 2004]. In addition, defects in synaptic transmission from the photoreceptors to secondary neurons of the visual system have also been reported to occur in Bbs4-null mice, thereby suggesting multiple functions for BBS4 in photoreceptors.
Pathogenesis of polydactyly. Aberrant Sonic hedgehog signaling has been suggested to account for the features of polydactyly in BBS. Recently, zebrafish bbs morphants have been shown to have altered Sonic hedgehog expression associated with abnormal fin bud patterning reminiscent of polydactyly in BBS [Tayeh et al 2008].
Pathogenesis of obesity. Recent findings have demonstrated that the development of obesity in murine models of BBS is associated with increased food intake and decreased locomotor activity [Rahmouni et al 2008].
Defects in leptin action may be responsible for the development of obesity in BBS. Leptin under normal physiologic circumstances suppresses appetite and increases energy expenditure by activating leptin receptors on specific neurons. In murine BBS, high circulating levels of leptin have been demonstrated and exogenous leptin administration fails to decrease body weight and food intake thereby suggesting that leptin resistance likely underlies the development of obesity in BBS [Rahmouni et al 2008]. Interestingly, loss of cilia specifically in proopiomelanocortin (POMC) neurons can result in an increase in weight and adiposity, suggesting that cilia on hypothalamic neurons may play a key role mediating feeding behaviour through the perception of satiety cues such as leptin. Leptin has been shown to excite POMC neurons in the presence of high glucose levels to signal to reduce food intake. High leptin levels and POMC gene expression is reduced in Bbs-null mice thereby suggesting a role for BBS proteins in mediating leptin signaling within the hypothalamus. Other recent studies suggest that BBS proteins may also be involved in adipogenesis and future studies will need to determine whether hypothalamic dysfunction alone is sufficient to account for the obesity phenotype observed in BBS [Forti et al 2007].
BBS1
Normal allelic variants. BBS1 is composed of 17 exons and encodes a 593-amino acid protein, with the ATG start codon lying within exon 1 [Mykytyn et al 2002, Beales et al 2003, Mykytyn et al 2003].
Pathologic allelic variants. A common p.Met390Arg mutation within exon 12 of the BBS1 gene was shown to be involved in 30% of individuals in a cohort of 129 probands with BBS [Mykytyn et al 2003]. In a further study of 259 individuals with BBS, a total of 74 p.Met390Arg mutant alleles were identified, with p.Met390Arg contributing to 18% of the cohort and involved in 79% of all families with BBS1 mutations [Beales et al 2003]. In addition, frameshift and nonsense mutations have been identified within the BBS1 coding sequence (see Table 2; pdf). (For more information, see Table A.)
Normal gene product. The sequence of the protein encoded by BBS1 displays no significant homology to any other known proteins, with the exception of a region near the N terminal shared with BBS2 and BBS7 containing a predicted beta-propeller domain. In C.elegans it is expressed exclusively in ciliated cells and predominantly localizes to the transition zones (akin to basal bodies) as well as moving bidirectionally along the ciliary axoneme [Blacque et al 2004].
Abnormal gene product. Bbs1-null mice display olfactory deficiencies and defects in olfactory structure and function [Kulaga et al 2004].
BBS2
Normal allelic variants. The BBS2 gene is composed of 17 exons and encodes a 721-amino acid protein; the start codon lies within exon 1 [Nishimura et al 2001] (see Table 3; pdf).
Pathologic allelic variants. A variety of nucleotide changes resulting in frameshift, nonsense, and missense mutations have been identified throughout the BBS2 gene; there is no known mutation hot spot (see Table 4; pdf) [Katsanis et al 2000, Katsanis et al 2001, Nishimura et al 2001, Katsanis et al 2002]. (For more information, see Table A.)
Normal gene product. The sequence of the protein encoded by BBS2 displays no significant homology to any other known proteins, with the exception of a region near the N terminal shared with BBS1 and BBS7 containing a predicted beta-propeller domain. In C.elegans it is expressed exclusively in ciliated cells and predominantly localizes to the transition zones (akin to basal bodies) as well as moving bidirectionally along the ciliary axoneme [Blacque et al 2004].
Abnormal gene product. Bbs2-null mice display obesity, retinal degeneration, renal cysts, male infertility, and olfactory deficiencies [Nishimura et al 2004].
ARL6/BBS3
Normal allelic variants. The ARL6 gene is composed of nine exons and encodes a 186-amino acid protein; the start codon lies within exon 3 [Chiang et al 2004, Fan et al 2004].
Pathologic allelic variants. Mutations in ARL6 account for only a small percentage of BBS (~0.4%). To date, only four homozygous missense mutations and one nonsense mutation have been identified within the coding sequence. (For more information, see Table A.)
Normal gene product. The ARL6 gene encodes an ADP-ribosylation-like factor (ARL) protein that belongs to the Ras superfamily of small GTP-binding proteins essential for various membrane-associated intracellular trafficking events [Chiang et al 2004, Fan et al 2004]. The C.elegans ARL6 orthologue is specifically expressed in ciliated cells and undergoes IFT within the ciliary axoneme [Fan et al 2004].
Abnormal gene product. Protein modeling suggests that the four missense mutations identified so far (p.Gly169Ala, p.Thr31Met, p.Leu170Trp, and p.Thr31Arg) alter residues near or within the GTP-binding site and are therefore likely to abrogate GTP binding [Fan et al 2004].
BBS4
Normal allelic variants. BBS4 is composed of 16 exons and has an open reading frame of 519 codons with the start codon positioned within the first exon [Mykytyn et al 2001] (see Table 5; pdf).
Pathologic allelic variants. A variety of nucleotide changes resulting in frameshift, nonsense, and missense mutations have been identified throughout the BBS4 gene, as well as one large intragenic deletion. There is no known mutation hot spot (see Table 6; pdf) [Katsanis et al 2001, Mykytyn et al 2001, Katsanis et al 2002, Nishimura et al 2005]. (For more information, see Table A.)
Normal gene product. The protein encoded by BBS4 contains at least ten TPR domains, which are thought to be involved in protein-protein interactions. It localizes to the basal body and centrosome in cultured cells and may function as an adaptor protein facilitating the loading of cargo onto the dynein-dynactin molecular motor in preparation for microtubule-dependent intracellular transport within the cilium or in the cytosol [Kim et al 2004].
Abnormal gene product. Mice null for Bbs4 are obese and have retinal degeneration, sperm flagellation defects, olfactory deficiencies, and defects in olfactory structure and function [Kulaga et al 2004, Mykytyn & Sheffield 2004]. Silencing of BBS4 in cultured cells leads to de-anchoring of microtubules, arrest of cell division, and apoptotic cell death [Kim et al 2004].
BBS5
Normal allelic variants. BBS5 is composed of 12 exons and has an open reading frame of 342 codons [Li et al 2004].
Pathologic allelic variants. Mutations in BBS5 account for only a small percentage of BBS (~0.4%). To date, one splice donor mutation that leads to a frameshift and a premature termination codon in exon 7, two nonsense mutations [Li et al 2004], and one large intragenic deletion [Nishimura et al 2005] have been identified. (For more information, see Table A.)
Normal gene product. The protein encoded by BBS5 localizes to the basal bodies and faintly within the ciliary axoneme in the ependymal cells lining the ventricles of the brain in mouse [Li et al 2004]. In C.elegans, bbs-5 is expressed exclusively in ciliated cells and predominantly localizes to the base of the cilia in ciliated head and tail neurons [Li et al 2004].
Abnormal gene product. Silencing of BBS5 in Chlamydomonas results in an aflagellated phenotype [Li et al 2004].
MKKS
Normal allelic variants. The MKKS gene is composed of six exons and encodes a 570-amino acid protein [Stone et al 2000]. The start codon lies within exon 3. Two alternatively spliced 5' exons are not translated (see Table 7; pdf) [Stone et al 2000, Slavotinek et al 2002].
Pathologic allelic variants. Nucleotide changes have been identified in all of the coding exons of the MKKS gene that result in frameshift, nonsense, and missense mutations; there is no known mutation hot spot. For a number of individuals, only one heterozygous mutation has been identified; one possible explanation includes triallelic inheritance, as these individuals may harbor mutations at one of the other BBS loci [Katsanis et al 2001]. See Table 8; pdf. (For more information, see Table A.)
Normal gene product. The 570-amino acid protein encoded by MKKS [Stone et al 2000] shows strong homology to archaebacterial chaperonins and the eukaryotic T-complex-related proteins (TCPs), which belong to the type II class of chaperonins [Kim et al 2005]. These proteins are implicated in facilitation of nascent protein folding in an ATP-dependent manner [reviewed by Wickner et al 1999]. MKKS localizes to the pericentriolar material (PCM), a proteinaceous tube surrounding centrioles but during mitosis it is also found at intracellular bridges [Kim et al 2005].
Abnormal gene product. The predicted substrate binding apical domain of the protein encoded by MKKS is sufficient for centrosomal localization, but several patient-derived missense mutations in this domain (p.Gly52Asp, p.Asp285Ala, p.Thr325Pro, and p.Gly345Glu) result in the protein mislocalization in cells [Kim et al 2005]. Silencing of MKKS in cultured cells leads to multinucleate and multicentrosomal cells with cytokinesis defects [Kim et al 2005]. Mice null for Mkks/Bbs6 are obese and have retinal degeneration, sperm flagellation defects, olfactory deficiencies, and defects in olfactory structure and function [Fath et al 2005, Ross et al 2005].
BBS7
Normal allelic variants. The BBS7 gene is composed of 19 exons and encodes a 672-amino acid protein [Badano et al 2003]. An alternative isoform produced by differential splicing of an alternative exon 18 results in an additional 44 residues and a discrete 3' UTR [Badano et al 2003].
Pathologic allelic variants. Only four different pathogenic mutations have been identified in the BBS7 gene thus far: one that results in a frameshift and the introduction of a premature termination codon, two missense mutations, and one large intragenic deletion [Badano et al 2003, Nishimura et al 2005]. See Table 9; pdf. (For more information, see Table A.)
Normal gene product. The sequence of the protein encoded by BBS7 displays no significant homology to any other known proteins, with the exception of a region near the N terminal shared with BBS1 and BBS2 containing a predicted beta-propeller domain. In C.elegans, it is expressed exclusively in ciliated cells and predominantly localizes to the transition zones (akin to basal bodies) as well as moving bidirectionally along the ciliary axoneme [Blacque et al 2004].
Abnormal gene product. C.elegans with mutations with the bbs-7 orthologue have structural and functional ciliary defects and compromised intraflagellar transport [Blacque et al 2004].
TTC8/BBS8
Normal allelic variants. The TTC8 gene is composed of 16 exons and encodes a 531-amino acid protein.
Pathologic allelic variants. Mutations in TTC8 account for only a small percentage of BBS. Two families with identical six base-pair deletions resulting in the deletion of two amino acids and another with a three base-pair deletion abolishing the splice donor site of exon 10 have been identified [Ansley et al 2003]. (For more information, see Table A.)
Normal gene product. BBS8 was identified because of its similarity to the BBS4 protein, containing eight TPR domains possibly involved in protein-protein interactions [Ansley et al 2003]. It also exhibits similarity to a prokaryotic domain pilF involved in twitching mobility and type-IV pilus assembly. The BBS8 protein localizes to the centrosome and basal body of cultured ciliated cells [Ansley et al 2003]. In C.elegans it is expressed exclusively in ciliated cells and predominantly localizes to the transition zones (akin to basal bodies) as well as moving bidirectionally along the ciliary axoneme [Ansley et al 2003, Blacque et al 2004].
Abnormal gene product. C.elegans with mutations with the bbs-8 orthologue have structural and functional ciliary defects and compromised intraflagellar transport [Blacque et al 2004].
B1/BBS9
Normal allelic variants. The parathyroid hormone-responsive gene B1 (B1) was recently identified as BBS9 [Nishimura et al 2005]. It is composed of 25 exons, with all except the first contributing to its various protein isoforms that range between 879 and 916 amino acids in length.
Pathologic allelic variants. A total of seven B1 mutations, including nonsense, splice site, missense, and frameshift, have been identified [Nishimura et al 2005]. (For more information, see Table A.)
Normal gene product. The B1 gene is widely expressed. It has no similarity to other BBS proteins and its specific function is unknown.
Abnormal gene product. The B1 gene is down-regulated in the retina of BBS4-null mice [Nishimura et al 2005].
BBS10
Normal allelic variants. A vertebrate-specific chaperonin-like gene was recently identified as BBS10 [Stoetzel et al 2006]. It is composed of two exons encoding a 723-amino acid protein, with the start codon contained within exon 1.
Pathologic allelic variants. BBS10 is a major locus for BBS, contributing mutant alleles in approximately 20% of all individuals with BBS. There are numerous missense, frameshift, and nonsense mutations spread throughout the coding region, with no mutational hot spot [Stoetzel et al 2006].
Normal gene product. BBS10 has a chaperonin domain organization conserved with all three major functional domains — equatorial, intermediate, and apical — and the flexible protrusion region specific to group II chaperonins. The ATP hydrolytic domain is conserved in BBS10, suggesting that it may be an active enzyme, in contrast to BBS6, where this catalytic site is absent.
Abnormal gene product. Suppression of bbs10 expression in zebrafish embryos causes shortening of the body axis and dorsal thinning, broadening and kinking of the notochord, and elongation of the somites [Stoetzel et al 2006].
BBS11 (TRIM32)
Normal allelic variants. TRIM32, a ubiquitin ligase, was recently identified [Chiang et al 2006]. It is composed of two exons encoding a 652-amino acid protein, with the ATG start codon in exon 2.
Pathologic allelic variants. The only mutation identified to date in TRIM32 associated with BBS is a homozygous missense mutation p.Pro130Ser, which lies in the N-terminal B-box domain, in affected individuals in an inbred Bedouin Arab family [Chiang et al 2006]. However, a missense variant, p.Asp487Asn in the C-terminal NHL domain of TRIM32, was previously associated with autosomal recessive limb-girdle muscular dystrophy (LGMD) [Frosk et al 2002].
Normal gene product. TRIM32 is a member of the TRIM family that is characterized by a common domain structure composed of a RING finger, B-box, and a coiled-coiled motif. It also contains five C-terminal NHL repeats. TRIM32 is thought to have E3 ubiquitin ligase activity, binds to myosin, and ubiquitinates actin, implicating TRIM32 in regulating components of the cytoskeleton.
Abnormal gene product. Zebrafish embryos with knockdown of TRIM32 expression display an abnormal Kuppfer’s vesicle, a transient ciliated organ involved in left-right patterning, and a delay in melanosome transport. The p.Pro130Ser mutant allele associated with BBS fails to rescue these abnormal phenotypes, in contrast to the p.Asp487Asn allele associated with LGMD, suggesting that each mutation disrupts different functions of TRIM32 [Chiang et al 2006].
BBS12
Normal allelic variants. BBS12 is a vertebrate-specific predicted chaperonin-like protein [Stoetzel et al 2007]. It is composed of two exons, of which only the second is coding, for a predicted protein of 710 amino acids.
Pathologic allelic variants. BBS12 is mutated in approximately 5% of families affected with BBS [Stoetzel et al 2007]. Mutations identified include frameshift (one of which, Phe372X – also known as F372fsX373 – is recurrent and present in several families), nonsense mutations, small in-frame deletions, a mutation that is predicted to extend the C-terminus of the protein, and missense alleles.
Normal gene product. BBS12 is related to the group II chaperonins and to a family of vertebrate-specific chaperonin-like sequences encompassing BBS10 and BBS6 [Stoetzel et al 2007]. The classic chaperonin domain architecture (equatorial, intermediate, and apical domains) is conserved, but BBS12 has an additional five specific inserted sequences within the intermediate and equatorial domains. However, the functional ATP hydrolysis motif is not conserved in BBS12, as is the case for BBS6.
Abnormal gene product. Injection of bbs12-specific morpholino (antisense oligonucleotides) into zebrafish embryos results in phenotypes consistent with convergence and extension (CE) defects, including shortened body axis, broadened somites, kinked notochord and dorsal thinning [Stoetzel et al 2007]. Simultaneous suppression of bbs12, bbs10, and bbs6 gene expression yielded similar but more severe phenotypes, suggesting a possible partial functional redundancy within this protein family.
BBS13 (MKS1)
Normal allelic variants. MKS1 contains 17 exons and encodes a 559-amino acid polypeptide containing a conserved B9 domain of unknown function [Leitch et al 2008]. Four splice variants are known.
Pathologic allelic variants. MKS1 accounts for approximately 4.5% of the total mutational load in BBS. Mutations identified include heterozygous missense mutations such as Arg123Gln, identified in two unrelated families, one of Lebanese origin; in the affected individual, a homozygous frameshift mutation in BBS10, S73fsX91, was also identified. Similarly, the Arg123Gln variant was also described in a Saudi family bearing an affected heterozygous mutation in BBS10 (Q242fsX258). Another heterozygous variant, Val339Met, was detected in a third Middle Eastern family who also had a homozygous BBS1 variant, Arg146X. In a fifth family of Northern European descent, another mutation, Ile450Thr, was also found. A sixth pedigree of Turkish descent was found to be compound heterozygous for two pathogenic MKS1 mutations that segregated in an autosomal recessive fashion: an allele resulting in Cys492Trp substitution and a base pair deletion that removes phenylalanine (F371del) [Leitch et al 2008].
Normal gene product. Mks proteins have been localized to either the basal body, primary cilium, or both [Dawe et al 2007, Delous et al 2007, Williams et al 2008]. Mks1 is one of six Mks proteins that is identified by the conserved B9 domain, the function of which is unclear. Nematode mks proteins also contain B9 domains and like their mammalian orthologues localize to the transition zones/basal bodies of sensory cilia, thereby demonstrating a conserved role for Mks proteins in ciliary function. Supporting this hypothesis is the finding of X-box consensus sequences lying within the promoter regions of these proteins. X-box sequences are recognized and regulated by the daf-19 or rfx family of transcription factors and thereby regulate the transcription of ciliogenic programs [Blacque et al 2005, Efimenko et al 2005].
Abnormal gene product. Human mutations in MKS1 lead to a ciliopathy phenotype characterized by encephalocele, cystic kidneys, hepatic fibrosis, and polydactyly. Knockdown of the human MKSR1 and MKSR2, (MKS-related protein 1 and 2) using RNA interference leads to a ciliogenesis defect [Bialas et al 2009]. Co-injection of MKS1 mRNA encoding the pathogenic MKS variants Asp123Gln, Asp286Gly, and Cys492Trp with mks1 morpholino in zebrafish does not rescue the gastrulation defect to the same degree as wild-type MKS1 mRNA [Leitch et al 2008].
BBS14 (CEP290/NPHP6)
Normal allelic variants. CEP290 is also known as 3H11Ag, BBS14, FLJ13615, JBTS5, KIAA0373, LCA10, MKS4, NPHP6, and SLSN6. It contains 54 exons which encode for a polypeptide of 2481 amino acids. Two splice variants are known.
Pathologic allelic variants. Mutations in CEP290 have been associated with a number of ciliopathies including BBS [Sayer et al 2006, Baala et al 2007, Helou et al 2007, Leitch et al 2008]. A homozygous nonsense mutation in CEP290, Glu1903X, was identified in an individual with BBS born to a consanguineous Saudi couple [Leitch et al 2008]. This individual also carried a complex compound heterozygous mutation in MKS3 (Gly218Ala and Ser320Cys) [Leitch et al 2008]. The clinical manifestations in this person included retinitis pigmentosa, nystagmus, renal disease, developmental delay, obesity, and mental retardation. Zebrafish embryos injected with both cep290 and mks morpholino show severe gastrulation defects, shortened body axis, widened notochords, and broad somites [Leitch et al 2008].
Normal gene product. CEP290 localizes to the centrosome and basal bodies of cilia in renal epithelial cells and the connecting cilium of photoreceptor cells. CEP290 has recently been shown to interact with another ciliary protein, PCM-1, a centriolar satellite protein [Kim et al 2008]. CEP290 and PCM-1 bind to each other and localize to centriolar satellites in a microtubule-dependent manner and CEP290 appears to be required for the integrity of the cytoplasmic microtubular network. Furthermore, both CEP290 and PCM-1 are required for ciliogenesis and play a role in targeting the small GTP-ase Rab8 to the ciliary membrane [Kim et al 2008].
Abnormal gene product. The CEP290 Glu1903X variant results in a truncated C-terminus of 576 amino acids. This allele was not found in 96 ethnically matched controls, in 184 European descended controls, or in any publicly available SNP database, thereby supporting a pathogenic variant as accountable for the BBS phenotype [Leitch et al 2008].