Molecular Genetic Pathogenesis
HBA1, HBA2, and HBZ
Alpha-globin
genes are duplicated (
HBA1 and
HBA2) and lie in the telomeric region of
chromosome 16 (16p13.3) within a cluster that also contains an embryonic α-like
gene (
HBZ) and three
pseudogenes (
HBZP (ψ-ζ),
HBAP1 (ψ-α
1),
HBM (ψ-α
2). A θ
gene (
HBQ1) with an unknown function is located at the 5' end of the cluster (See ).
HBA1 and
HBA2 are embedded within two markedly homologous regions that extend for approximately 4 kb. Their sequence homology is maintained by
gene conversion and unequal crossover events. In this
DNA region, three highly homologous segments, named X, Y, and Z, separated by non-homologous segments, have been defined ().
As a result of unequal genetic exchange, individuals who are phenotypically normal may have four, five, or six α-globin genes and two to six HBZ-like genes. HBA-like globin genes are arranged in the cluster in the order in which they are expressed during development. The genes encoding the α1-globin chain (HBA1) and the α2-globin chain (HBA2) display a marked homology resulting from repeated rounds of gene conversion.
The level of transcription of the two genes differs, as HBA2 produces two to three times more α-globin than HBA1. Regarding the translation profile of HBA1 mRNA and HBA2 mRNA, contrasting results in which percentages of HBA2 mRNA are higher or only slightly higher than percentages of HBA1 mRNA have been reported. The different expression of the two α-globin genes has important clinical implications for the amount of structural α-variant resulting from mutation of HBA1 or HBA2, and for the pathophysiology of the deletion and non-deletion pathologic variants of the HBA1 and HBA2 genes.
The expression of
HBA1 and
HBA2 genes is regulated by a region (HS-40) located 40 kb upstream from the α-globin cluster (). This region contains multiple binding sites for transcriptional factors (NF-E2, GATA-1). The
deletion of HS-40 results in an α-thalassemia
phenotype, in spite of the structural integrity of both α-globin
genes.
Normal allelic variants. Both HBA1 and HBA2 genes have three coding exons. The mRNAs produced by the HBA1 and HBA2 genes have identical coding regions and can be distinguished only by their 3' UTR.
Pathologic allelic variants. See
Table 4.
Deletion of one or both
HBA1 and
HBA2 genes is the most common cause of α-thalassemia:
-
Alpha+-thalassemia. Reciprocal recombination between the Z boxes, which are 3.7 kb apart, or between the X boxes, 4.2 kb apart, gives rise to chromosomes with a single α-globin gene. The two resulting α-thalassemia mutations are referred to respectively as the 3.7-kb rightward deletion (-α3.7) and the 4.2-kb leftward deletion (-α4.2) ():
-
In relation to the location of the crossover within the Z box, the -α3.7 deletion is subdivided into three varieties named I, II, and III.
-
In addition to the -α3.7 and the -α4.2 common alleles, other rare deletions involving a single α-globin gene have been reported.
-
These recombinational events also result in the production of chromosomes containing three α-globin genes. A triplicated α-globin gene inherited with heterozygous β-thalassemia results in a mild thalassemia intermedia phenotype.
-
Alphaº-thalassemia. Extended deletions varying from 100 kb to more than 250 kb and removing both α-globin genes (HBA1 and HBA2) (and sometimes the embryonic HBZ gene) result in the complete absence of α-chain production from that allele. Most such deletions are founder mutations that arose by one of several molecular mechanisms, including illegitimate recombination, reciprocal translocation, and truncation of chromosome 16. More than 20 different αº-thalassemia deletions have been reported to date:
-
The most common alleles are the Southeast Asian (--SEA) and the Filipino (--FIL) types.
-
Two deletion alleles, -α5.2 and -α20.5, which remove HBA2 and part of HBA1, produce αº-thalassemia [Higgs 2001].
-
A deletion removing HBA1 and the theta gene (HBQ1) and extending downstream centromeric from the α-globin gene cluster results in αº-thalassemia. The silencing of intact HBA2 in this chromosome is related to an antisense RNA transcribed from the widely expressed LUC7L gene, becoming juxtaposed to the normal HBA2 by the deletion, and running through the HBA2 sequences [Tufarelli et al 2003].
-
Nine deletions of the HS-40 region also result in the silencing of the intact α-globin genes, thereby producing αº-thalassemia [Higgs 2001].
Non-deletion α-thalassemia. Less frequently, α-thalassemia results from single point mutations or oligonucleotide insertion/deletion in regions critical for α-globin gene expression. In non-deletion α-thalassemia, the affected gene is denoted T (e.g., αTSaudi). Considered as a group, the non-deletion α-thalassemia mutations appear to have a more severe effect on α-globin gene expression and hematologic phenotype than single α-globin gene deletions. This phenomenon may be explained by the majority of the mutations affecting HBA2, whose expression may predominate over HBA1 [Higgs 2001]. No compensatory increase in expression in the remaining functional α gene occurs when the other is inactivated by a point mutation, in contrast to the compensatory increase in expression in the remaining functional α gene when a single α-globin gene is deleted (e.g., the -α3.7 deletion).
At present, more than 45 well-defined causes of non-deletion α-thalassemia are known.
The molecular mechanisms leading to the silencing of either
HBA1 or
HBA2 include:
mutations involving
RNA splicing, the poly (A) additional signal, the initiation of mRNA
translation, as well as
missense mutation of the termination, in-frame
deletions, frame-shift
mutations, and
nonsense mutations.
Mutations of α-globin
genes that result in the production of hyper-unstable globin variants such as Hb
Quong Sze and that are unable to assemble into stable β
4 tetramers and are thus rapidly degraded, may also result in α-thalassemia (
Table 1) [
Higgs 2001].
The most common non-deletion mutation, which is frequently seen in Southeast Asia, is HbConstant Spring (HbCS), resulting from a mutation of the stop codon of HBA2. This mutation leads to the production of an α-globin chain elongated by 31 amino acids. HbCS is produced in very small amounts because its mRNA is unstable. Heterozygotes for HbCS and other rare elongated variants, along with the presence of the Hb variant, produce the αº-thalassemia phenotype.
Some of the mutations causing α-chain structural variants may occur in a chromosome with only one α-globin gene (e.g., HbQThailand, HbGPhiladelphia). (For more information, see Table A: locus-specific databases and HGMD.)
DNA Nucleotide Change 1 (Standard Nomenclature 2) | Protein Amino-Acid Change 1 or Functional Globin Genes Deleted 3 (Standard Nomenclature 2) | Reference Sequence |
|---|
| (HBA2:c.2T>C) | Alpha2 initiation codon Met>Thr; -α NcoI of HBA2 (HBA2:p.Met1Thr) | NM_000517.4NP_000508.1 |
| (HBA2:c.377T>C) | Alpha2 Leu125Pro,
Hb Quong Sze
(HBA2:p.Leu126Pro) |
| (HBA2:c.427T>C) | Alpha2 142, Stop>Gln
HbConstant Spring (HbCS)
(HBA2:p.X143Glnext32) |
| Codon 30/31 2-bp deletion
(HBA2:c.94_95delAG) | The deletion of 2 nucleotides causes a frameshift & premature termination at codon(TAA)
(HBA2:p.Arg32AspfsX24) |
| HBA2:c.[339C>G ; 340_351delCTCCCCGCCGAG] | Alpha2 His112Gln and deletion of codons 113-116 -
Leu-Pro-Ala-Glu,
Hb Lleida
(HBA2:p.His113Gln; p.Leu114_ Glu117del) | NM_000517.4NP_000508.1 |
| Splicing sites -αHphI α, HphI digestion for the pentanucleotide HBA2 IVS-1 deletion
(HBA2:c.95+2_95+6delTGAGG) | -- |
| HBA1:c.223G>C | Asp74Gly, HbQ-Thailand
(HBA1:p.Asp75Gly) | NM_000558.3NP_000549.1 |
| HBA2:c.[207C>G (or HBA1) or 207C>A] | Asn68Lys, HbG Philadelphia
(HBA2 or HBA1 p:Asn69Lys) | NM_000517.4NP_000508.1 |
| PolyA addition site of the HBA2 gene
(AATAAA >AATAAG)
(HBA2:c.*+94A>G) | Alpha2 αTSaudi |
| -α IN: 2 bp del
(c.[-2_-3delAC; -α3.7]4) | Deletion of HBA2 and of nucleotides that additionally impair translation | |
| -α3.7 | Deletion of HBA2 | Z84721.1 |
| -α4.2 | Deletion of HBA2 |
| -α5.2 | Deletion of HBA2 and 5’ end of HBA1 5 |
-α20.5 (g.15164_37864del22701) | Deletion of HBA2 and 5’ end of HBA1 |
| −−FIL
(g.11684_43534del31851) | Deletion of HBA2 and HBA1 |
| −−MED
(g.24664_41064del16401) | Deletion of HBA2 and HBA1 |
| −−SEA
(g.26264_45564del19301) | Deletion of HBA2 and HBA1 |
| −−THAI
(g.10664_44164del33501) | Deletion of HBA2 and HBA1 |
Normal gene product: The α-globin chains produced by HBA1 and HBA2 mRNAs have identical amino acid sequences. The heterodimer protein hemoglobin A is made up of two α chains and two β chains.
Abnormal gene product: The consequence of a single α-globin
gene deletion is reduced production of α-globin chains by the
affected chromosome (α
+-thalassemia). Measurement of α-globin mRNA indicates that the -α
4.2 mutation is not associated with a compensatory increase in expression in the remaining
HBA1 gene, whereas with the -α
3.7 mutation, the remaining
HBA1 gene expression is roughly halfway between that of the normal
HBA2 and
HBA1 genes ()