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Disease characteristics. Phenylalanine hydroxylase (PAH) deficiency results in intolerance to the dietary intake of the essential amino acid phenylalanine and produces a spectrum of disorders including phenylketonuria (PKU), non-PKU hyperphenylalaninemia (non-PKU HPA), and variant PKU. Classic PKU is caused by a complete or near-complete deficiency of phenylalanine hydroxylase activity; without dietary restriction of phenylalanine, most children with PKU develop profound and irreversible intellectual disability. Non-PKU HPA is associated with a much lower risk of impaired cognitive development in the absence of treatment.
Diagnosis/testing. PAH deficiency can be diagnosed by newborn screening in virtually 100% of cases based on detection of the presence of hyperphenylalaninemia using the Guthrie microbial or other assays on a blood spot obtained from a heel prick. PKU is diagnosed in individuals with plasma phenylalanine (Phe) concentrations higher than 1000 µmol/L in the untreated state; non-PKU HPA is diagnosed in individuals with plasma Phe concentrations consistently above normal (i.e., >120 µmol/L), but lower than 1000 µmol/L when on a normal diet. Molecular genetic testing of PAH is used primarily for genetic counseling purposes to determine carrier status of at-risk relatives and for prenatal testing.
Management. Treatment of manifestations: Classic PKU: a low-protein diet and use of a Phe-free medical formula as soon as possible after birth to achieve plasma Phe concentrations of 120-360 µmol/L (2-6 mg/dL). A significant proportion of individuals with PKU may benefit from adjuvant therapy with 6R-BH4 stereoisomer. Non-PKU HPA: It is debated whether those with plasma Phe concentrations consistently below 600 µmol/L (10 mg/dL) require dietary treatment.
Prevention of primary manifestations: Same as Treatment of manifestations.
Surveillance: Regular monitoring of plasma Phe and Tyr concentrations in individuals with classic PKU.
Agents/circumstances to avoid: Aspartame, an artificial sweetener that contains phenylalanine.
Evaluation of relatives at risk: Newborn sibs of an individual with PKU who have not been tested prenatally should have blood concentration of Phe measured shortly after birth (in addition to newborn screening) to allow earliest possible diagnosis and treatment.
Pregnancy management: Phe-restricted diet for at least several months prior to conception in order to maintain plasma Phe concentrations between 120 and 360 µmol/L (2-6 mg/dL); after conception, continuous nutritional guidance and weekly or biweekly measurement of plasma Phe concentration to assure that target levels are met in addition to adequate energy intake with the proper proportion of protein, fat, and carbohydrates.
Genetic counseling. PAH deficiency is inherited in an autosomal recessive manner. At conception, each sib of an affected individual has a 25% chance of being affected, a 50% chance of being an asymptomatic carrier, and a 25% chance of being unaffected and not a carrier. Carrier testing for at-risk relatives and prenatal testing for pregnancies at increased risk are possible if the disease-causing mutations have been identified in an affected family member.
Neonates with phenylalanine hydroxylase (PAH) deficiency show no physical signs of hyperphenylalaninemia (HPA).
When untreated, older children can show the following clinical manifestations: microcephaly, epilepsy, a musty body odor, decreased skin and hair pigmentation, eczema, severe intellectual disability, and behavior problems, as well as structural brain changes visible on MRI.
The main route for phenylalanine metabolism is hydroxylation of phenylalanine to tyrosine by phenylalanine hydroxylase (PAH).
Biochemical testing.
The diagnosis of primary phenylalanine hydroxylase deficiency (PAH deficiency) is based on:
Note: Enzyme analysis is not usually indicated because PAH is a hepatic enzyme.
For the nomenclature used to describe PAH deficiency, see Clinical Description.
PAH deficiency is most frequently diagnosed through newborn screening programs using dried blood spots.
Gene. PAH is the only gene in which mutations are known to cause phenylalanine hydroxylase deficiency [Scriver & Kaufman 2001].
Clinical testing
Table 1. Summary of Molecular Genetic Testing Used in Phenylalanine Hydroxylase Deficiency
| Gene Symbol | Test Method | Mutations Detected | Mutation Detection Frequency by Test Method 1 | Test Availability | |||||
|---|---|---|---|---|---|---|---|---|---|
| PAH | Targeted mutation analysis | 1-15 common mutations (alleles may be population-related) | 30%-50% | Clinical | |||||
| Sequence analysis of select exons 2 | Exons 7, 8, 11, 12 3 | 100% for variants in the select exons | |||||||
| Sequence analysis / mutation scanning 4 | Common and private sequence variants 5 | 99% 2 | |||||||
| Duplication / deletion analysis 6 | Exonic or whole-gene deletions / duplications | About 3% 7 | |||||||
| Linkage analysis 8 | Not applicable | Not applicable |
1. The ability of the test method used to detect a mutation that is present in the indicated gene
2. The mutation detection frequency may be lower than 99% if not all of the PAH exons are included in the sequence analysis.
3. Select exons may vary by laboratory.
4. Sequence analysis and mutation scanning of the entire gene can have similar mutation detection frequencies; however, mutation detection rates for mutation scanning may vary considerably among laboratories depending on the specific protocol used. See Bräutigam et al [2003].
5. Examples of mutations detected by sequence analysis may include small intragenic deletions/insertions and missense, nonsense, and splice site mutations; typically, exonic or whole-gene deletions/duplications are not detected.
6. Testing that identifies deletions/duplications not readily detectable by sequence analysis of the coding and flanking intronic regions of genomic DNA; included in the variety of methods that may be used are: quantitative PCR, long-range PCR, multiplex ligation-dependent probe amplification (MLPA), and chromosomal microarray (CMA) that includes this gene/chromosome segment.
7. This technique has been used to detect abnormal dosage in 20% of uncharacterized PKU alleles [Gable et al 2003] and therefore duplications and deletions may account for up to 3% of mutations [Kozak et al 2006].
8. For families in which only one or neither PAH mutant allele has been identified, linkage analysis may be an option for carrier testing and prenatal diagnosis. Linkage studies are based on accurate clinical diagnosis of PAH deficiency in the affected family member(s) and accurate understanding of the genetic relationships in the family. Samples from multiple family members, including a sample from at least one affected individual, are required to perform linkage analysis. The markers used for linkage are highly informative and are both intragenic and flanking to the PAH locus; thus, they can be used with greater than 99% accuracy in families with PAH deficiency.
Test characteristics. Information on test sensitivity, specificity, and other test characteristics can be found at www.eurogentest.org [Zschocke et al 2012 (full text)].
Interpretation of test results. For issues to consider in interpretation of sequence analysis results, click here.
Information on specific allelic variants may be available in Molecular Genetics (see Table A. Genes and Databases and/or Pathologic allelic variants).
To confirm/establish the diagnosis in a proband in the following clinical scenarios:
1. Newborn who is positive on newborn screening (NBS) for elevated phenylalanine with normal or reduced tyrosine (
).
PAH deficiency is most commonly diagnosed in routine screening of newborns. PAH deficiency can be detected in virtually 100% of cases by newborn screening utilizing the Guthrie card bloodspot obtained from a heel prick.
2. Newborn with a previously affected sib
3. Older child or adult with signs and symptoms suggestive of PKU, or a woman who has a child with signs and symptoms suggestive of maternal PKU embryopathy
4. Individuals with hyperphenylalanemia to whom any of the following apply may benefit from molecular genetic testing:
Carrier testing for at-risk relatives requires prior identification of the disease-causing mutations in the family.
Note: Carriers are heterozygotes for this autosomal recessive disorder and are not at risk of developing the disorder.
Prenatal diagnosis and preimplantation genetic diagnosis (PGD) for at-risk pregnancies require prior identification of the disease-causing mutations in the family.
No other phenotypes are known to be associated with mutations in PAH.
Hyperphenylalaninemia classification schemes. Phenylalanine in excess can be toxic to brain and cognitive development; thus any degree of hyperphenylalaninemia could be called a 'phenylketonuric' phenotype and would be a risk factor to be managed accordingly. However, because the risk also appears to vary relative to the degree of hyperphenylalaninemia, various classification schemes have emerged.
The initial classification scheme proposed by Kayaalp et al [1997] was meant to keep the nomenclature simple. This system uses the following terms:
The classification scheme proposed by Guldberg et al [1998] subdivides PAH deficiency into the following four categories:
Untreated children with persistent severe hyperphenylalaninemia (i.e., PKU) show impaired brain development. Signs and symptoms include microcephaly, epilepsy, severe intellectual disability, and behavior problems. The excretion of excessive phenylalanine and its metabolites can create a musty body odor and skin conditions such as eczema. The associated inhibition of tyrosinase is responsible for decreased skin and hair pigmentation. Affected individuals also have decreased myelin formation and decreased dopamine, norepinephrine, and serotonin production. Further problems can emerge later in life and include exaggerated deep tendon reflexes, tremor, and paraplegia or hemiplegia [Pietz et al 1998, Williams 1998, Pérez-Dueñas et al 2005]. Individuals for whom treatment was initiated after the first months of life, or those who were never treated may develop severe behavioral or psychiatric problems (depression, anxiety, phobias) in the third or fourth decade [Hanley 2004].
Children with persistent severe hyperphenylalaninemia identified and treated from birth
Phenylalanine hydroxylase deficiency is a 'multifactorial disorder' in that both environment (dietary intake of Phe) and genotype (mutation of both PAH alleles) are necessary causal components of disease [Scriver & Waters 1999]. PAH deficiency is also a 'complex' disorder at the cognitive and metabolic levels, because each individual has a personal genome, even those with similar mutant PAH genotypes may not have similar 'PKU' phenotypes. As explained by Scriver [2002], PAH genotype may correlate with phenylalanine tolerance and BH4 responsiveness but is not always a robust predictor of phenotype; thus, evaluating and treating the individual (i.e., the actual phenotype), rather than the phenotype predicted from genotype, is the correct approach.
The genotype-phenotype correlation in PAH deficiency is not absolute. On the one hand, variability of metabolic phenotypes in PAH deficiency is caused primarily by different mutations in PAH [Kayaalp et al 1997, Guldberg et al 1998]. The specific PAH genotype significantly determines the metabolic phenotype in most cases. For example, in compound heterozygotes with functional hemizygosity (null/missense paired alleles), the less severe of the two PAH mutations determines disease severity. However, when two mutant alleles associated with similar severity are present, the phenotype may be milder than predicted by either allele [Kayaalp et al 1997, Guldberg et al 1998, Waters et al 1998].
Genotype-phenotype correlation is also seen with a large number of mutant alleles that are BH4 responsive. Therefore, genotyping may help to predict which individuals will respond to BH4 supplementation and the level of the response. Mutations in the regulatory domain of PAH are more likely to show inconsistency in BH4 responsiveness from person to person [Trefz et al 2009] (see BH4 Databatases)
However, the correlation becomes more complex when clinical outcomes are also taken into account. While DiSilvestre et al [1991] found that genotype does predict biochemical phenotype (i.e., by Phe loading tests), it does not always predict clinical phenotype (i.e., occurrence of intellectual disability). Some untreated individuals with PAH deficiency and biallelic PAH mutations that usually confer classic PKU have elevated plasma Phe concentration but normal intelligence. In other instances, sibs with the same genotype have different clinical and metabolic phenotypes. The mechanisms that cause dissimilarities in pathogenesis at the level of the brain in spite of comparable plasma Phe concentrations are still unclear [Scriver & Waters 1999].
These individuals with an atypical phenotype have significantly lower brain Phe concentrations than do individuals with similar blood Phe concentrations.
Since the appearance of universal newborn screening, symptomatic classic PKU is infrequently seen. Its predicted incidence in screened populations of fewer than one in a million live births reflects those children not detected by newborn screening. See Table 2.
Table 2. Prevalence of PAH Deficiency by Population
| Population | PAH Deficiency in Live Births | Carrier Rate | Citation |
|---|---|---|---|
| Turks | 1:2,600 | 1/26 | Ozalp et al [1986] |
| Irish | 1:4,500 | 1/33 | DiLella et al [1986] |
| Northern European origin, East Asian | 1:10,000 | 1/50 | Scriver & Kaufman [2001] |
| Japanese | 1:143,000 | 1/200 | Aoki & Wada [1988] |
| Finnish, Ashkenazi Jewish | 1:200,000 | 1/225 | Scriver & Kaufman [2001] |
| African | ~1:100,000 | ? | Anecdotal |
Hyperphenylalaninemia (HPA) has been called the epitome of human biochemical genetics. In 1934, Asjbørn Følling recognized that a certain type of intellectual disability was caused by elevated levels of phenylalanine in body fluids. He identified the disease as an autosomal recessive condition. In the 1940s, Lionel Penrose, who had recognized 'phenylketonuria' (PKU) to be the first form of intellectual disability with a chemical explanation, introduced the idea that PKU was not randomly distributed in human populations and could be treatable. In the mid-1950s, it was demonstrated that individuals with PKU had a deficiency of hepatic cytosolic phenylalanine hydroxylase (PAH) enzyme activity.
Next it was shown that affected individuals responded to dietary restriction of the essential nutrient phenylalanine. By the 1960s, the Guthrie microbial inhibition assay was used for mass screening of newborns, providing early diagnosis and access to successful treatment. Newborn screening for HPA has been routine throughout North America [National Newborn Screening Status Report (pdf)] and the UK since the mid-1960s and in most other developed countries since the early 1970s [Scriver 1998, Levy 1999]. The test became routine because of the excellent prognosis for children with PAH deficiency who are treated early and the high risk for severe and irreversible brain damage for children who are not treated. In most countries a parental right of refusal for this test exists; however, this right is exercised only in rare circumstances.
In the 1970s, it was discovered that not all HPA was PKU. Some forms of HPA were caused by disorders of synthesis and recycling of the cofactor (tetrahydrobiopterin, or BH4) involved in the Phe hydroxylation reaction. During the 1980s, the human PAH gene was mapped and cloned, and the first mutations identified. In the 1990s, in vitro expression analysis was being used to study the effects of different PAH alleles on enzyme function and the crystal structure of PAH was elucidated.
HPA is treatable. Affected individuals can lead normal lives. Continuous efforts are made to improve the taste and convenience of the current synthetic dietary supplements [Rohr et al 2001]. Research to improve the current treatment with restrictive phenylalanine diets, supplemented by medical formula, is ongoing (see Management, Therapies Under Investigation).
Hyperphenylalaninemia (HPA) may also result from the impaired synthesis or recycling of tetrahydrobiopterin (BH4), the cofactor in the phenylalanine, tyrosine, and tryptophan hydroxylation reactions. All of the HPAs caused by BH4 deficiency are inherited in an autosomal recessive manner. They account for approximately 2% of individuals with HPA. BH4 is also involved in catecholamine, serotonin, and nitric oxide biosynthesis (see www.biopku.org).
Blau et al [2001] and Scriver & Kaufman [2001] emphasize that all neonates with persistent hyperphenylalaninemia must be screened for the BH4 deficiencies. The following tests are best performed in specialized centers. Prenatal diagnosis is possible for all forms of BH4 deficiencies. The following screening tests are essential:
If screening test results show abnormal pterins, the following confirmatory tests are recommended:
The typical (severe) forms of GTPCH, PTPS, and DHPR deficiency have the following variable, but common, findings: intellectual disability, convulsions, disturbance of tone and posture, drowsiness, irritability, abnormal movements, recurrent hyperthermia without infections, hypersalivation, and swallowing difficulties. Microcephaly is common in PTPS and DHPR deficiencies. Plasma phenylalanine concentrations can vary from slightly above normal (>120 µmol/L) to as high as 2500 µmol/L. Mild forms of BH4 deficiency have no clinical signs.
PCD deficiency, sometimes referred to as 'primapterinuria' is associated with benign transient hyperphenylalaninemia.
In principle, BH4 deficiencies are treatable. Treatment requires the normalization of BH4 availability and of blood Phe concentration and restoration of the BH4-dependent hydroxylation of tyrosine and tryptophan. This is achieved by BH4 supplementation along with dietary modification, neurotransmitter precursor replacement therapy, and supplements of folinic acid in DHPR deficiency. The treatment should be initiated early and probably continued for life [Blau et al 2001, Ponzone et al 2006].
More information on the BH4 deficiencies can be found at www.biopku.org.
Note to clinicians: For a patient-specific ‘simultaneous consult’ related to this disorder, go to
, an interactive diagnostic decision support software tool that provides differential diagnoses based on patient findings (registration or institutional access required).
To establish the extent of disease and needs in an individual diagnosed with phenylalanine hydroxylase deficiency, the following evaluations are recommended:
Note: Although the genotype/phenotype relationship for BH4 responsiveness is also fairly robust, discrepancies have been described; see PAH mutation database.
Treatment for affected individuals of all ages can be difficult and is enhanced with the teaching and support of an experienced healthcare team consisting of physicians, nutritionists, genetic counselors, social workers, nurses, and psychologists.
Restriction of dietary phenylalanine. The generally accepted goal of treatment for the hyperphenylalaninemias is normalization of the concentrations of Phe (phenylalanine) and Tyr (tyrosine) in the blood and thus prevention of the cognitive deficits that are attributable to this disorder [Burgard et al 1999]; Phe concentrations of 120-360 µmol/L (2-6 mg/dL) [Koch et al 1996] or 40-240 µmol/L (1-4 mg/dL) [Burgard et al 1999] are generally regarded as safe.
A diet restricted in Phe should be initiated as soon as possible after birth and continued at least into adolescence [Pietz et al 1998], perhaps for life [National Institutes of Health Consensus Development Panel 2001].
It is clear that if the diet is not followed closely (especially during childhood) and if plasma Phe concentration is allowed to rise frequently above the recommended concentration, some impairment is inevitable. A meta-analysis by Waisbren et al [2007] showed a reduction of IQ of 1.9 to 3.8 points for every 100 μmol/L increase in lifetime blood phenylalanine level. In addition, despite normal IQ, children and adolescents treated early have a higher frequency of ADHD, decreased autonomy, and school problems compared to either healthy controls or chronically ill peers [Simon et al 2008, Antshel 2010, Brumm et al 2010]. There is some evidence that childhood metabolic control correlates with development of these problems; this relationship needs to be clarified by well-designed prospective studies.
The restricted phenylalanine diet is adapted to individual tolerance for phenylalanine and includes appropriate protein and energy for age.
Plasma concentrations of Phe within the effective treatment range and normal nutritional status cannot be achieved by a low-protein diet alone, but rather require the use of a Phe-free medical formula.
The diet must be carefully monitored so that growth and nutritional status are unaffected and deficiency of phenylalanine or tyrosine is not created. The diet must be adjusted for all relevant factors including growth, illness, and activity. Adequate calcium and vitamin D intake as assessed by the metabolic dietician is an important component of care.
Supplementation with BH4. Individuality in BH4 pharmacokinetics implies the need for patient-specific dosage schedules [Blau & Erlandsen 2004]. For patients who have a positive BH4 loading test, 6R-BH4 should be given (≤20 mg/kg daily in divided oral doses). Long-term treatment in a small number of persons responsive to BH4 has documented the maintenance of the phenylalanine-lowering effect and the absence of major side effects [Trefz et al 2005].
In the majority of individuals, the BH4 response is likely a result of correction of PAH mutant kinetic effects and/or a chaperone-like effect of BH4 [Erlandsen et al 2004]. Whatever the mechanism of the therapeutic effect, the 6R-BH4 enhances in vivo phenylalanine hydroxylation and the corresponding oxidative flux and lowers plasma phenylalanine concentration with improved tolerance of dietary phenylalanine [Muntau et al 2002].
Treatment in infancy
Care must be taken to avoid long periods of low blood Phe concentration, which is also harmful to brain development. Blood Phe concentration should be monitored weekly or biweekly to evaluate control [Burgard et al 1999].
Treatment in childhood. Children older than age two years should maintain a total amino acid consumption of 2 g/kg/day including 25 mg tyrosine/kg/day.
Practices in blood Phe concentration monitoring vary widely [Blau et al 2010]. The NIH recommends measurement of blood phenylalanine levels on a weekly basis for the first year of life, on a biweekly basis until age 13 years, and on a monthly basis thereafter [National Institutes of Health Consensus Development Panel 2001].
Treatment in adolescence and adulthood. Recommendations for treatment of adolescents and adults vary [Linder 2006, Lachman & Murphy 2011].
In general, support for 'diet therapy for life' is increasing [National Institutes of Health Consensus Development Panel 2001, McPheeters et al 2012].
Individuals with non-PKU HPA who have plasma Phe concentrations consistently below 600 µmol/L (10 mg/dL) are not at higher risk of developing intellectual, neurologic, and neuropsychological impairment than are individuals without PAH deficiency. While some specialists debate the advisability of non-treatment, others believe that dietary treatment is unnecessary for the individuals in this class. A study by Weglage et al [2001] confirmed the hypothesis of Levy et al [1971] that such individuals may not need dietary treatment. Thirty-one individuals with HPA who were never treated and whose plasma Phe concentrations did not exceed 600 µmol/L had normal cognitive neuropsychological development. Two recent review articles on this debate have been published and it is still unclear whether these individuals need treatment or not [Hanley 2011, van Spronsen 2011].
Care should be taken so that girls in this group receive proper counseling about the teratogenic effects of elevated maternal plasma Phe concentration (i.e., 'maternal HPA/PKU') when they reach childbearing age [Weglage et al 2001] (see Pregnancy Management).
Plasma Phe and Tyr concentrations in individuals with classic PKU must be monitored regularly [National Institutes of Health Consensus Development Panel 2001].
Lower bone mineral density has been found in both affected individuals on dietary therapy and those who have relaxed their dietary management [Schwahn et al 1998, Porta et al 2011]. The clinical significance of this finding is unclear and currently, there are no recommendations for surveillance for osteopenia. This will likely change as the treated cohort of affected individuals age. A baseline bone mineral density scan may be of value for long-term follow up.
Aspartame, an artificial sweetener in widespread use, contains phenylalanine. Persons with PKU should either avoid products containing aspartame or calculate intake of Phe and adapt diet components accordingly.
Newborn sibs of an individual with PKU who have not been tested prenatally should have blood concentration of phenylalanine measured shortly after birth, in addition to the newborn screen. This will allow earlier detection than by newborn screening alone and thus, treatment as soon as possible after birth.
See Genetic Counseling for issues related to testing of at-risk relatives for genetic counseling purposes.
Women with PAH deficiency who have been properly treated throughout childhood and adolescence have normal physical and intellectual development. However, if the woman has high plasma Phe concentrations, her intrauterine environment will be hostile to a developing fetus as phenylalanine is a potent teratogen.
Preconception. It is strongly recommended that women with PAH deficiency use reliable methods of contraception to prevent unplanned pregnancies.
Women with PAH deficiency who are off diet and are planning a pregnancy should start a Phe-restricted diet prior to conception and should maintain plasma Phe concentrations between 120 and 360 µmol/L (2-6 mg/dL), ideally over several months, before attempting conception [Maillot et al 2008, American College of Obstetricians and Gynecologists Committee on Genetics 2009]. Furthermore, avoidance of variability in phenylalanine control is important [Maillot et al 2008].
Pregnancy management. After conception, women with PAH deficiency should be offered continuous nutritional guidance and weekly or biweekly measurement of plasma Phe concentration, as dietary Phe and protein requirements change considerably during pregnancy. It is important that pregnant women with PAH deficiency have an adequate energy intake with the proper proportion of protein, fat, and carbohydrates. They should try to attain normal weight gain patterns to provide the most favorable conditions for fetal growth [Koch et al 2000, Maillot et al 2008].
Proper prenatal care should include serial ultrasonography to: (1) identify nonviable pregnancies in the first trimester; (2) monitor fetal growth; and (3) identify congenital abnormalities (e.g., congenital heart disease) that are relatively common in babies whose mothers have PAH deficiency. This information can be useful in anticipating the postnatal needs of the infant.
Support for women with PAH deficiency. Waisbren et al [1998] contend that suboptimal home environments can have as much of an adverse effect on offspring as a delay in control of maternal plasma Phe concentration. Of concern, the limited intellectual abilities, the reduced social resources, and the emotional difficulties of many women with HPA may complicate adherence to the diet, prenatal care, and the care of their infant [Koch et al 2000]. Support for women with HPA/PKU starting before conception and continuing after delivery is essential for optimal outcome. A successful pilot project involving mothers serving as resources for their daughters with PKU when they reached childbearing age resulted in better dietary control during pregnancy and better outcome for the children [Waisbren et al 2000].
Risk for maternal HPA/PKU. The abnormalities that result from exposure of a fetus to high maternal plasma Phe concentration are the result of 'maternal HPA/PKU'. The likelihood that the fetus will have congenital heart disease, intrauterine and postnatal growth retardation, microcephaly, and intellectual disability depends upon the severity of the maternal HPA and the effectiveness of the mother's dietary management.
The risk for these abnormalities is both dose dependent and time dependent. Thus, optimal plasma Phe concentrations must be strictly maintained throughout pregnancy to reduce the risk for each individual abnormality; continuing studies corroborate this position [Rouse & Azen 2004, Prick et al 2012].
Unfortunately, many pregnancies are unplanned:
Other risks. Too little published data exist on children born to mothers with PKU. One interesting observation of this cohort of children is a decline in the scores achieved on developmental tests at age four years from those achieved on similar tests taken at age two years [Waisbren et al 2000]. Longitudinal studies of these children are necessary to interpret the significance of these findings.
Although the treatment of PKU with phenylalanine-restricted diets has been hugely successful, the poor palatability of the diet results in poor compliance in adolescence and adulthood. A number of attempts to find other treatment modalities for PKU are ongoing.
Large neutral amino acids (LNAA) transporters. At the blood-brain barrier, phenylalanine shares a transporter with other large neutral amino acids (LNAA). Some individuals exclude excess phenylalanine, more or less efficiently, because they show evidence of variation in the high-capacity/high km component of phenylalanine transport across the blood-brain barrier [Weglage et al 2002]. LNAA supplementation has reduced brain phenylalanine concentration despite consistently high serum concentrations of phenylalanine by competition at this transporter [Pietz et al 1999, Moats et al 2003]. In non-compliant adults, this may help to protect the brain from acute toxic effects of phenylalanine.
Significant improvement in ability to concentrate and decreased self-injurious behavior were seen with trial of LNAA supplements in a small number of untreated adults with PKU [Kalkanoğlu et al 2005].
A similar transporter for LNAA also exists in the intestine, and supplementation with a different formulation of LNAA reduced the blood Phe concentration by 40%-50% in a small number of individuals with PKU [Matalon et al 2006]. These supplements will not replace the phenylalanine-restricted diet but may help relax dietary restriction of treated individuals or may aid in management of adults who are not treated. LNAA supplementation had a specific impact on executive function but was of limited use in individuals who were already complying with dietary restriction [Schindeler et al 2007]. Larger clinical trials are needed before conclusions on the effectiveness of these treatments can be made.
BH4 supplementation. As an adjunct to dietary therapy, BH4 therapy may become the standard of care for PKU in a subset of affected individuals [Vernon et al 2010]. By increasing the phenylalanine tolerance, BH4 supplementation may allow for a more complete diet, thus minimizing risks of nutritional deficiencies associated with a low-protein diet. Long-term treatment in BH4-responsive persons has documented the maintenance of the Phe-lowering effect and the absence of major side effects [Trefz et al 2005]. There is some anecdotal evidence, including positive behavioral improvements, in severely affected individuals with untreated PKU [Vernon et al 2010]. Burton et al [2011] has shown that this treatment is safe and effective in children younger than age four years. One limitation to this therapy may be its high cost.
BH4 may have important implications for the treatment of maternal PKU [Trefz & Blau 2003]. In one case report, pregnancies were successfully managed with BH4 supplementation; however, more data are needed to prove the safety and efficacy of this alternative treatment in pregnancy [Koch et al 2005].
Enzyme substitution. Under investigation is the administration of the enzyme phenylalanine ammonia lyase (PAL) by oral routes to degrade Phe to trans-cinnamic acid and ammonia [Sarkissian et al 1999, Gámez et al 2004]. The oral route is complicated by proteolytic degradation, while injected PAL is complicated by increased immunogenicity [Gámez et al 2005, Sarkissian & Gámez 2005]. PEGylation (conjugation with polyethylene glycol) of PAL has been found to decrease the immune response [Gámez et al 2005, Sarkissian & Gámez 2005]. Clinical trials with this protected form of injectable enzyme are currently underway. Modification of oral PAL to prevent degradation by digestive enzymes is also being investigated [Kang et al 2010].
Somatic gene therapy is also being explored in animal models and holds some promise for possible future treatment [Eisensmith et al 1999, National Institutes of Health Consensus Development Panel 2001, Ding et al 2004, Ding et al 2006].
Search ClinicalTrials.gov for access to information on clinical studies for a wide range of diseases and conditions.
Genetic counseling is the process of providing individuals and families with information on the nature, inheritance, and implications of genetic disorders to help them make informed medical and personal decisions. The following section deals with genetic risk assessment and the use of family history and genetic testing to clarify genetic status for family members. This section is not meant to address all personal, cultural, or ethical issues that individuals may face or to substitute for consultation with a genetics professional. —ED.
Phenylalanine hydroxylase (PAH) deficiency is inherited in an autosomal recessive manner.
Parents of a proband
Sibs of a proband
Offspring of a proband
Carrier testing for at-risk family members is possible if the disease-causing mutations have been identified in a family member. Three methods can be used:
Reproductive partners of carriers can now access carrier testing on a limited basis.
See Management, Evaluation of Relatives at Risk for information on evaluating at-risk relatives for the purpose of early diagnosis and treatment.
Family planning
DNA banking is the storage of DNA (typically extracted from white blood cells) for possible future use. Because it is likely that testing methodology and our understanding of genes, mutations, and diseases will improve in the future, consideration should be given to banking DNA of affected individuals.
Prenatal diagnosis for pregnancies at increased risk is possible by analysis of DNA extracted from fetal cells obtained by amniocentesis (usually performed at ~15-18 weeks’ gestation) or chorionic villus sampling (usually performed at ~10-12 weeks’ gestation). Both disease-causing alleles of an affected family member must be identified or linkage established in the family before prenatal testing can be performed.
Note: Gestational age is expressed as menstrual weeks calculated either from the first day of the last normal menstrual period or by ultrasound measurements.
Other issues to consider. Prenatal diagnosis of a treatable condition associated with a good prognosis with early treatment may be controversial if the testing is being considered for the purpose of pregnancy termination rather than early diagnosis. Although most centers would consider this to be the choice of the parents, discussion of these issues is appropriate. Prenatal diagnosis may be a consideration in countries where treatment is expensive or unavailable.
Preimplantation genetic diagnosis (PGD) may be an option for some families in which the disease-causing mutations have been identified in an affected family member.
GeneReviews staff has selected the following disease-specific and/or umbrella support organizations and/or registries for the benefit of individuals with this disorder and their families. GeneReviews is not responsible for the information provided by other organizations. For information on selection criteria, click here.
Information in the Molecular Genetics and OMIM tables may differ from that elsewhere in the GeneReview: tables may contain more recent information. —ED.
Table A. Phenylalanine Hydroxylase Deficiency: Genes and Databases
| Gene Symbol | Chromosomal Locus | Protein Name | Locus Specific | HGMD |
|---|---|---|---|---|
| PAH | 12q23 | Phenylalanine-4-hydroxylase | Phenylalanine Hydroxylase Locus Knowledgebase PAH homepage - Mendelian genes | PAH |
Table B. OMIM Entries for Phenylalanine Hydroxylase Deficiency (View All in OMIM)
Normal allelic variants. PAH contains 13 exons and spans 90 kb [Scriver & Kaufman 2001, Scriver et al 2008]; the genomic sequence is known to code for a 2.6-kb mature messenger RNA (NM_000277.1). Thirty-one different normal allelic variants causing minor changes in the gene sequence have been identified (see Table A, PAH Locus Knowledgebase); all are presumed to be neutral in their effect on protein product [Waters et al 1998].
Pathologic allelic variants. More than 500 different disease-causing mutations have been identified to date in PAH (see Table A, PAH Locus Knowledgebase and HGMD). This database provides information on mutations, associated phenotypes, gene structure, enzyme structure, clinical guidance, and much else [Scriver et al 2003].
Mutations observed in PAH (see Table 3) include missense, splice site, and nonsense mutations, small deletions, and insertions.
Table 3. Classes of Mutations Observed in PAH
| % of Mutations | Genetic Mechanism |
|---|---|
| 62% | Missense |
| 13% | Deletion (mainly small) 1 |
| 11% | Splice |
| 6% | Silent |
| 5% | Nonsense |
| 2% | Insertion |
| <1% | Deletion or duplication of exon(s) or whole gene |
From PAHdb Knowledgebase
1. Large deletions account for 2%-3% of mutations [Kozak et al 2006].
Normal gene product. The normal product of PAH is the protein phenylalanine hydroxylase (PAH), containing 452 amino acids (NP_000268.1; see Table A, PAH Locus Knowledgebase). PAH enzymes can exist as tetramers and dimers in equilibrium [Hufton et al 1998]. The PAH enzyme hydroxylates phenylalanine to tyrosine, this reaction being the rate-limiting step in the major pathway by which phenylalanine is catabolized to CO2 and water [Scriver & Kaufman 2001].
Abnormal gene product. The mutations that confer the most severe phenotypes are known or predicted to completely abolish PAH activity. These 'null' mutations are of various types. Missense mutations usually permit the enzyme to retain some degree of residual activity; however, it is difficult to assess severity in vivo because the in vivo activity is not the simple equivalent of the in vitro enzymatic phenotype [Waters et al 1998, Gjetting et al 2001].
Medical Genetic Searches: A specialized PubMed search designed for clinicians that is located on the PubMed Clinical Queries page 
John J Mitchell, MD (2005-present)
Shannon Ryan, MSc; Montreal Children's Hospital (2000-2005)
Charles R Scriver, MD; Montreal Children’s Hospital (2000-2013)
This work was supported in part by the Canadian Genetic Diseases Network and by the Fonds de la Recherche en Santé du Québec du Réseau de médecine génétique appliquée.
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