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Neuronal Ceroid-Lipofuscinoses

PPT1-Related Neuronal Ceroid-Lipofuscinosis, TPP1-Related Neuronal Ceroid-Lipofuscinosis, CLN3-Related Neuronal Ceroid-Lipofuscinosis, CLN5-Related Neuronal Ceroid-Lipofuscinosis, CLN6-Related Neuronal Ceroid-Lipofuscinosis, MFSD8-Related Neuronal Ceroid-Lipofuscinosis, CLN8-Related Neuronal Ceroid-Lipofuscinosis, CLN9-Related Neuronal Ceroid-Lipofuscinosis, CTSD-Related Neuronal Ceroid-Lipofuscinosis

Sara E Mole, PhD and Ruth E Williams, MD.

Author Information
Sara E Mole, PhD
MRC Laboratory for Molecular Cell Biology and UCL Insitute of Child Health
University College London
London
s.mole/at/ucl.ac.uk
Ruth E Williams, MD
Consultant Paediatric Neurologist
SKY
The Evelina Children's Hospital
Guy’s and St Thomas’ NHS Foundation Trust
London
ruth.williams/at/gstt.nhs.uk

Initial Posting: October 10, 2001; Last Update: March 2, 2010.

Summary

Disease characteristics. The neuronal ceroid-lipofuscinoses (NCLs) are a group of inherited, neurodegenerative, lysosomal-storage disorders characterized by progressive intellectual and motor deterioration, seizures, and early death. Visual loss is a feature of most forms. Phenotypes have been characterized clinically by age of onset and order of appearance of the clinical features: infantile neuronal ceroid-lipofuscinosis (INCL, Santavuori-Haltia), late-infantile (LINCL, Jansky-Bielschowsky), juvenile (JNCL, Batten disease, Spielmeyer-Vogt), adult (ANCL, Kuf's disease), and Northern epilepsy (NE, progressive epilepsy with intellectual disability). • Children with INCL are normal at birth; symptoms usually present acutely between ages six and 24 months. Initial signs include: delayed development, myoclonic jerks and/or seizures, deceleration of head growth, and specific electroencephalographic (EEG) changes. Affected infants develop retinal blindness and seizures by age two years, followed by progressive intellectual disability. • The first symptoms of LINCL typically appear between ages two and four years, usually starting with epilepsy, followed by regression of developmental milestones, dementia, ataxia, and extrapyramidal and pyramidal signs. Visual impairment typically appears at age four to six years and rapidly progresses to blindness. Life expectancy ranges from age six years to older than 40 years. • The onset of JNCL is usually between ages four and ten years. Rapidly progressing visual loss resulting in total blindness within two to four years is often the first clinical sign. Epilepsy with generalized tonic-clonic seizures, complex-partial seizures, or myoclonic seizures typically appears between ages five and 18 years. Life expectancy ranges from the late teens to the 30s. • Initial signs and symptoms of ANCL usually appear around age 30 years, with death occurring about ten years later. Affected individuals have either progressive myoclonic epilepsy or behavior abnormalities; and all have dementia, ataxia, and late-occurring pyramidal and extrapyramidal signs. • Northern epilepsy is characterized by tonic-clonic or complex-partial seizures, intellectual disability, and motor dysfunction. Onset occurs between ages two and ten years.

Diagnosis/testing. The diagnosis of an NCL is often based on assay of enzyme activity and/or molecular genetic testing, and, in some instances, on electron microscopy (EM) of biopsied tissues. The diagnostic testing strategy in a proband depends on the age of onset. Assays of the enzymatic activity of palmitoyl-protein thioesterase 1 (PPT1), the protein product of the gene PPT1, and tripeptidyl-peptidase 1 (TPP-1), the protein product of the gene TPP1, are clinically available. Molecular genetic testing for the eight genes known to be associated with NCL — PPT1, TPP1, CLN3, CLN5, CLN6, MFSD8, CLN8, and CTSD — is clinically available.

Management. Treatment of manifestations: Treatment is symptomatic. Seizures, malnutrition, gastroesophageal reflux, pneumonia, sialorrhea, hyperactivity and behavior problems, depression, spasticity, Parkinsonian symptoms and dystonia can be palliated. Antiepileptic drugs (AEDs) should be selected with caution. Benzodiazepines may help control seizures, anxiety, and spasticity. Trihexyphenydil improves dystonia and sialorrhea. Individuals with swallowing problems may benefit from placement of a gastric (G) tube. Antidepressants and antipsychotic agents are sometimes indicated for those with JNCL.

Agents/circumstances to avoid: carbamazepine (CZP) and phenytoin because they may increase seizure activity and result in clinical deterioration; lamotrigine may exacerbate seizures and myoclonus especially in LINCL/CLN2.

Genetic counseling. The NCLs are inherited in an autosomal recessive manner with the exception of ANCL, which can be inherited in either an autosomal recessive or an autosomal dominant manner. The parents of a child with an autosomal recessive form of NCL are obligate heterozygotes, and, therefore, carry one mutant allele. Heterozygotes have no symptoms. At conception, each sib of such a proband has a 25% chance of being affected, a 50% chance of being an asymptomatic carrier, and a 25% chance of being unaffected and not a carrier. Carrier testing for at-risk relatives is possible if the disease-causing mutations in the family are known. Prenatal testing for pregnancies at increased risk is possible if the proband has documented deficient enzyme activity of either PPT1 or TPP-1 or if the two disease-causing mutations in one of the eight genes associated with NCL have been identified in the family.

Diagnosis

Clinical Diagnosis

Clinically, the neuronal ceroid-lipofuscinoses (NCLs) are characterized by the following (Table 1):

  • Seizures
  • Progressive deterioration of cognition (dementia)
  • Motor function impairment (involuntary movement, ataxia, spasticity)
  • Vision loss
    • The NCL phenotypes most often associated with progressive vision loss are:
      • Infantile neuronal ceroid-lipofuscinosis (INCL)
      • Late-infantile neuronal ceroid-lipofuscinosis (LINCL) - all types
      • Juvenile neuronal ceroid-lipofuscinosis (JNCL)
    • The NCL phenotypes most commonly not associated with vision loss are:
      • Adult neuronal ceroid-lipofuscinosis (ANCL) (Kufs disease)
      • Northern epilepsy (NE) or progressive epilepsy with mental retardation (EPMR)
      • Very rarely, variant late-infantile NCL caused by mutations in CLN8.

The first presenting symptom may vary among NCL phenotypes, which are typically distinguished on the basis of age of onset and clinical manifestations. Unusual mutations in many, if not all, NCL-causing genes may result in a milder disease phenotype than that typically associated with complete loss of function.

Table 1. NCL Phenotypes and Their Known Associated Genes

PhenotypePhenotype by Gene and OnsetPresenting Symptoms 1
Proportion Gene SymbolAge of Onset
CongenitalMinor CTSDBefore or around birthSz, microcephaly
Infantile (INCL) (Santavuori-Haltia)MajorPPT16-24 mosCognitive/motor decline, ↓VA, Sz
Late-infantile (LINCL)Classic (cLINCL) (Jansky-Bielschowsky)MajorTPP12-4 yrsSz, motor/cognitive decline, ↓VA
Finnish variant
(vLINCL)
Major in Finland;
minor elsewhere
CLN54-7 yrsCognitive/motor decline, Sz, ↓VA
Early-juvenile variant (vLINCL)MinorCLN618 mos - 8 yrs Cognitive/motor decline, Sz, ↓VA
Variant (vLINCL) MinorMFSD8Cognitive/motor decline, Sz, ↓VA
MinorCLN83-7.5 yrsMotor decline, Sz, ↓VA
RareCTSD
MinorPPT1
Juvenile (JNCL) (Batten disease, Spielmeyer-Vogt)Classic JNCLMajorCLN34-10 yrs↓VA, Sz, cognitive/motor decline, neuropsychiatric
Variant JNCLMinorPPT1
RareTPP1
RareCLN9
Northern epilepsy (NE)
(progressive epilepsy with
mental retardation [EPMR])
Major in Finland, rare elsewhereCLN85-10 yrsSz, cognitive decline, sometimes ↓VA
Adult (ANCL) (Kuf's disease)UnknownCTSD, PPT, CLN3, CLN5, CLN4 15-50 yrsCognitive/motor decline, Sz (type A), behavior abnormalities (type B)

1. Cognitive/motor decline, vision loss (↓VA), and seizures appear (Sz) in the order in which they are most likely to occur in each phenotype

Testing

Histologic findings. EM studies can be performed with 5-10 mL of heparinized whole blood (lymphocytes) or tissue biopsies, now usually of skin, but previously of conjunctiva, or other tissues. EM studies (Table 2) remain essential in the non-classical NCL types, and show the presence of the following:

  • Granular osmophilic deposits (GROD) in CLN1/INCL and CLN10/CTSD forms
  • Predominantly curvilinear profiles (CV) in CLN2/cLINCL
  • Fingerprint profiles (FP) in JNCL
  • Mixed-type inclusions (CV, FP, and GROD) in CLN5, CLN6, MFSD8, CLN8 and other late-infantile variant forms
  • Mixed-type inclusions (CV, FP, and GROD) in ANCL forms

Note: The appearance of the pathologic inclusions can depend on the tissue examined.

Enzyme activity. Three lysosomal enzymes (Table 2) have been identified as being deficient in the neuronal ceroid-lipofuscinoses in white blood cells, fibroblasts, and chorionic villi:

  • Palmitoyl-protein thioesterase 1 (PPT1) encoded by the gene PPT1. A fluorimetric assay for PPT1 based on the fluorochrome 4-methylumbelliferone detects no PPT1 activity in leukocytes, fibroblasts, lymphoblasts, amniotic fluid cells, or chorionic villi in forms of NCL caused by PPT1 mutations [Voznyi et al 1999].
  • Tripeptidyl-peptidase 1 (TPP-1) encoded by the gene TPP1. Individuals with TPP1 mutations usually have no enzymatic activity in leukocytes, fibroblasts, amniotic fluid cells, or chorionic villi [Junaid et al 1999].
  • Cathepsin D (CTSD) encoded by the gene CTSD. Individuals with CTSD mutations usually have no enzymatic activity in leukocytes or fibroblasts.
  • A carrier of a mutation in PPT1, TPP1, or CTSD typically has 50% of normal enzymatic activity in PPT1 or TPP-1 or CTSD, respectively [Das et al 1998, Zhong et al 1998, Sleat et al 1999, Zhong et al 2000a].

Table 2. Electron Microscopic (EM) Findings and Enzyme Activity by NCL Genotype

Locus NameGene SymbolPathologic Diagnosis on EM 1LymphocytesEnyzme Activity 2
CLN1PPT1GRODNot vacuolatedPPT1 deficient
CLN2TPP1CVNot vacuolatedTPP-1 deficient
CLN3CLN3FPVacuolatedNot applicable
CLN4UnknownMixedNot vacuolated
CLN5CLN5FPNot vacuolated
CLN6CLN6CV, FP, RLNot vacuolated
CLN7MFSD8CV, FP, RLNot vacuolated
CLN8CLN8CV- or GROD-like structuresNot usually vacuolated
CLN9UnknownGROD, CVNot vacuolatedUnknown; probably not applicable
CLN10CTSDGRODNot vacuolatedCTSD deficient

1. EM = electron microscopy

GROD = granular osmophilic deposits

CV = curvilinear profiles

FP = fingerprint profiles

Mixed = CV, FP, RL, GROD

RL = rectilinear complex

2. PPT1 = palmitoyl-protein thioesterase 1

TPP-1 = tripeptidyl peptidase 1

Molecular Genetic Testing

Genes. The genes PPT1, TPP1, CLN3, CLN5, CLN6, CLN7/MFSD8, CLN8, and CTSD are known to be associated with the neuronal ceroid-lipofuscinoses.

Other loci

  • CLN4. The gene has not been identified.
  • CLN9. The gene has not been identified.

Clinical testing

Table 3. Summary Molecular Genetic Testing Used in NCL (See Table 1 for Phenotypes Associated with Mutations in each Gene)

Gene SymbolTest MethodMutations DetectedMutation Detection Frequency by Gene and Test Method 1Test Availability
PPT1Targeted mutation analysisp.Arg122Trp 2Finnish:98% 3
Non-Finnish: 10% 4 for the targeted variant
Clinical Image testing.jpg
p.Arg151X 260% 4 for the targeted variant
Sequence analysisSequence variants>98% 4
TPP1Targeted mutation analysisc.509-1G>C, p.Arg208X 260%-90% 5 for the targeted variantClinical Image testing.jpg
Sequence analysisSequence variants97% 5
CLN3Targeted mutation analysis c.461-280_677+382del 6 (1-kb deletion) 96% 7 for the targeted c.461-280_677+382del deletionClinical Image testing.jpg
Sequence analysisSequence variants>98% 7
CLN5Targeted mutation analysisp.Tyr392X 94% (Finnish ancestry) 8Clinical Image testing.jpg
Sequence analysisSequence variantsEstimate 90%-95%
Deletion/duplication analysis 9Exonic and whole-gene deletionsNot known
CLN6Sequence analysisSequence variants92% 10Clinical Image testing.jpg
MFSD8Sequence analysisSequence variantsNot known, estimate >95%Clinical Image testing.jpg
CLN8Targeted mutation analysisp.Arg24Gly ~100% (Finnish ancestry) 11Clinical Image testing.jpg
Sequence analysisSequence variantsEstimate 90%-95%
CTSDSequence analysisSequence variantsNot known, estimate >95%Clinical Image testing.jpg

Test Availability refers to availability in the GeneTests Laboratory Directory. GeneReviews designates a molecular genetic test as clinically available only if the test is listed in the GeneTests Laboratory Directory by either a US CLIA-licensed laboratory or a non-US clinical laboratory. GeneTests does not verify laboratory-submitted information or warrant any aspect of a laboratory's licensure or performance. Clinicians must communicate directly with the laboratories to verify information.

1. The ability of the test method used to detect a mutation that is present in the indicated gene. Percent of individuals with at least one identifiable mutation

2. Mutation(s) detected by targeted analysis may vary among laboratories.

3. PPT1 enzyme-deficient individuals with INCL [Bellizzi et al 2000]

4. PPT1 enzyme-deficient individuals [Das et al 1998, Hofmann et al 1999]

5. TPP-1 enzyme-deficient individuals with LINCL [Zhong et al 1998, Hartikainen et al 1999, Lauronen et al 1999, Sleat et al 1999, Zhong et al 2000b]

6. Common deletion of exons 7 and 8 (see Molecular Genetics)

7. Individuals with JNCL [Munroe et al 1997, Mao et al 2003, Mole et al 2004, Leman et al 2005]

8. Individuals of Finnish ancestry have variant LINCL and the CLN5 mutation (p.Tyr392X) [Savukoski et al 1998]

9. Testing that detects deletions/duplications not readily detectable by sequence analysis of genomic DNA; a variety of methods including quantitative PCR, long-range PCR, multiplex ligation-dependent probe amplification (MLPA), or array GH may be used.

10. Families with vLINCL with linkage to CLN6 gene [Gao et al 2002, Sharp et al 2003, Teixeira et al 2003]

11. For individuals of Finnish ancestry [Ranta et al 2001, Ranta et al 2004]

Interpretation of test results. For issues to consider in interpretation of sequence analysis results, click here.

Testing Strategy

The testing strategy to establish the diagnosis in a proband depends on the age of onset. See Figure 1:

Figure 1

Figure

Figure 1. Diagnostic algorithm for NCL. When attempting to diagnose NCL, the age of onset or ethnicity can help direct but not exclude testing.

If onset is around birth:

  • Assay CTSD enzyme activity
  • If CTSD enzyme activity is deficient, perform molecular genetic testing of CTSD to identify the family-specific mutations *
  • If CTSD enzyme activity is normal, assay PPT1 and TPPI enzyme activity
  • If PPT1 or TPP-1 enzyme activity is deficient, perform molecular genetic testing of PPT1 or TPP1 to identify the family-specific mutations *
  • If CTSD, PPT1, and TPP-1 enzyme activity is normal and a skin biopsy shows suggestive storage material by EM, consider molecular genetic testing of CLN3, then other known NCL genes

* Note: Family-specific mutations are identified for carrier detection among at-risk family members and for prenatal diagnosis

If onset is between six months and two years:

  • Assay PPT1 enzyme activity
  • If PPT1 enzyme activity is deficient, perform molecular genetic testing of PPT1 to identify the family-specific mutations
  • If PPT1 enzyme activity is normal, assay CTSD and TPP-1 enzyme activity
  • If CTSD enzyme activity is deficient, perform molecular genetic testing of CTSD to identify the family-specific mutations
  • If TPP-1 enzyme activity is deficient, perform molecular genetic testing of TPP1 to identify the family-specific mutations
  • If PPT1, TPP-1, and CTSD enzyme activity is normal and a skin biopsy shows suggestive storage material by EM, consider molecular genetic testing of CLN3, then other known NCL genes

If onset is between ages two and five years and initial symptoms include seizures and developmental regression:

  • Assay TPP-1 enzyme activity
  • If TPP-1 enzyme activity is deficient, perform molecular genetic testing of TPP1 to identify the family-specific mutations
  • If TPP-1 enzyme activity is normal, assay PPT1 and CTSD enzyme activity
  • If PPT1 enzyme activity is deficient, perform molecular genetic testing of PPT1 to identify the family-specific mutations
  • If CTSD enzyme activity is deficient, perform molecular genetic testing of CTSD to identify the family-specific mutations
  • If TPP-1/PPT1/CTSD enzyme activity is normal and a skin biopsy shows suggestive storage material by EM, consider molecular genetic testing of CLN5, CLN6, MFSD8, and CLN8.

If onset is between ages five and 12 years, and initial symptoms include visual failure:

  • Evaluate blood film for vacuolated lymphocytes
  • If vacuolated lymphocytes are present, perform deletion/duplication analysis of CLN3
  • If the common CLN3 deletion (c.461-280_677+382del) is not present, look for other mutations in CLN3.
  • If no mutations in CLN3 are found, assay the enzyme activity of PPT1, TPP-1, and CTSD
  • If PPT1 enzyme activity is deficient, perform molecular genetic testing of PPT1 to identify the family-specific mutations
  • If TPP-1 enzyme activity is deficient, perform molecular genetic testing of TPP1 to identify the family-specific mutations
  • If CTSD enzyme activity is deficient, perform molecular genetic testing of CTSD to identify the family-specific mutations
  • If a skin biopsy shows suggestive storage material by EM, consider molecular genetic testing of CLN5, CLN6, MFSD8, CLN8, and any other known NCL-causing genes

If onset is after age 12 years (adulthood):

  • Perform skin biopsy for EM
  • If characteristic inclusions are present, assay PPT1, TPP-1 and CTSD enzyme activity
  • If characteristic FP, RL, or CV inclusions are present, and CTSD/PPT1/TPP-1 enzyme activity is normal, pursue molecular genetic testing of all other genes associated with NCL.

Carrier testing for relatives at risk for the autosomal recessive forms of NCL requires prior identification of the disease-causing mutations in the family.

Note: Carriers are heterozygotes for an autosomal recessive disorder and are not at risk of developing the disorder.

Prenatal diagnosis and preimplantation genetic diagnosis (PGD) for at-risk pregnancies require prior identification of the disease-causing mutation(s) in the family.

Enzymatically or genetically undefined cases. Store DNA and fibroblast cell lines and consult an NCL research scientist who may be able to access new research tests, or store samples until diagnostic tests become available.

Note: Cell banking is the storage of cell lines (typically derived from a skin biopsy) for possible future use. Because it is likely that testing methodology and our understanding of genes, mutations, and diseases will improve in the future, consideration should be given to banking cells particularly when all of the genes responsible have not yet been identified, not all disease-causing mutations have been elucidated, or testing is available on a research or linkage basis only. These cells can also be used to supply unlimited DNA or RNA samples.

Clinical Description

Natural History

All individuals with a neuronal ceroid-lipofuscinosis (NCL) have progressive decline, and an evolving cognitive and motor disorder, and seizures. With the exception of adult neuronal ceroid-lipofuscinosis (ANCL) and Northern epilepsy (NE), NCL phenotypes are usually associated with progressive loss of vision.

A direct correlation between the gene that is mutated and phenotype does not always exist (see Table 1 and Genotype-Phenotype Correlations); for example, individuals with mutations in PPT1 can present with four different phenotypes (INCL, LINCL, JNCL, and ANCL). Nonetheless, describing the NCLs by phenotype is clinically useful for diagnosis and prognosis [Das et al 1998, Wisniewski et al 1998a, Wisniewski et al 1999, van Diggelen et al 2001, Wisniewski et al 2001].

Infantile NCL (INCL, Santavuori-Haltia)

Classic INCL usually presents acutely between six and 24 months of age. Onset before six months ad after two years of age also occurs [Das et al 1998, Wisniewski et al 1998a, Wisniewski et al 1999, van Diggelen et al 2001, Wisniewski et al 2001].

Initial signs include: delayed development, myoclonic jerks, and/or seizures. In one series of 21 affected children, the early signs of INCL were deceleration of head growth and specific electroencephalographic (EEG) changes (from age 13 months). In a study of eight newly diagnosed children with INCL (ages 15 to 27 months), mild-to-moderate deterioration of intellectual ability was observed in all [Riikonen et al 2000]. The children had speech problems and lost interest in playing and in toys; however, they remained interested in their surroundings. They had moderate motor dysfunction.

Retinal blindness and seizures are evident by age two years. The ERG (electroretinogram) is unrecordable by age four years.

Psychomotor abilities deteriorate rapidly. Children fail to thrive and develop microcephaly. Life expectancy varies from two to nine years.

MRI findings are: variable cerebral atrophy; thalamic hypointensity in the white matter and basal ganglia; and thin, hyperintense, periventricular high-signal rims of white matter [Riikonen et al 2000]. The progressive diffuse brain atrophy seen on MRI seen in children with INCL during the first four years of life then stabilizes.

Late-Infantile NCL (LINCL)

Classic late-infantile NCL (Jansky-Bielschowsky). The first symptoms of LINCL typically appear between ages two and four years, usually starting with epilepsy. Generalized tonic-clonic seizures, absences, and partial-onset seizures may be observed. Myoclonus becomes prominent after the onset of seizures.

Sometimes slowing of developmental milestones is evident before the onset of seizures. Following the onset of seizures, previously acquired motor/language and cognitive skills are lost.

Visual impairment appears between ages four and six years and rapidly progresses to blindness.

Affected children are usually bedridden by age six years; disabilities are severe and nursing care needs are considerable by mid-childhood. Life expectancy is usually between age six years and adolescence but can be longer [Wisniewski et al 1998a, Wisniewski et al 1999].

Electroencephalogram (EEG) shows spikes in the occipital region in response to photic stimulation at 1-2 Hz.

Electroretinogram (ERG) is usually abnormal at presentation and becomes undetectable soon thereafter. On occasion, the ERG may be normal at presentation [Weleber 1998].

Visual evoked potentials (VEPs) are enhanced for a long period and diminish in the final stage of the disease.

MRI shows progressive cerebral and cerebellar atrophy with normal basal ganglia and thalami.

Variants of late-infantile NCL

Many variant types are caused by mutations in distinct genes (Table 1). Some variant types are associated with but not exclusive to certain ethnic origins.

The clinical features of variant late-infantile NCL types may have typical characteristics, but in general overlap.

  • Finnish, fLINCL, CLN5. The onset of disease is usually ages 4.5 to seven years. Life expectancy is between 13 and 35 years.
  • Indian vLINCL, CLN6. Visual loss and seizures may be the initial signs and symptoms. In children with onset after age four years, epilepsy, ataxia, and myoclonus may be the initial features.
  • Gypsy vLINCL, MFSD8/CLN7. Visual loss and seizures may be the initial signs and symptoms. In children with onset after age four years, epilepsy, ataxia, and myoclonus may be the initial features.
  • Turkish tLINCL, CLN8. Onset may be earlier, between ages two and six years [Sharp et al 2003].
  • Genetically undefined. Onset is usually between ages two and six years.

Juvenile NCL (JNCL)

Classic juvenile NCL (Batten Disease, Spielmeyer-Vogt). Onset is usually between ages four and eight years (mean age ~5 years).

Rapidly progressing vision loss is almost always the first clinical sign of the disease and may be the only sign for two to five years. Children become totally blind within two to four years of the onset of vision loss. Ophthalmologic examination early in the course of JNCL may reveal macular changes only; gradually, typical signs of pan retinal degeneration develop: pigmentary changes in the retinal periphery, vascular attenuation, and optic nerve pallor. ERG shows loss of photoreceptor function early on [Weleber 1998].

Epilepsy with generalized tonic-clonic seizures, focal seizures, or myoclonic seizures typically appears between ages nine and 18 years. The EEG shows disorganization and spike-and-slow-wave complexes.

Little variation is observed in the visual symptoms and seizures, but variation can occur in the progression of motor and intellectual deterioration. Speech disturbances (festinating stuttering, often mislabeled as echolalia) and slow decline in cognition occur around the time of onset of seizures.

Behavioral problems, extrapyramidal signs, and sleep disturbance occur in the second decade. Backman et al [2005] found that some individuals with JNCL experience multiple psychiatric problems such as: disturbed thoughts, attention problems, somatic complaints, and aggressive behavior. Depression was uncommon.

Most individuals with classic JNCL live until the late teens or early 20s; some may live into their 30s.

CT and MRI reveal cerebral, and to a lesser degree, cerebellar atrophy in the later stages (age >15 years).

Atypical JNCL. Individuals with atypical JNCL are often compound heterozygotes for CLN3 mutations (c.461-280_677+382del and another mutation). For example, p.Glu295Lys is associated with a particularly protracted disease in which a high level of functioning can be maintained for several decades. In other examples onset of epilepsy was delayed for a decade or more. The cause of these phenotypic differences is unknown. All variants with mutations in CLN3 have visual failure but vary in the severity of seizures and other neurologic complications.

JNCL variants are also caused by milder mutations in genes that usually cause a more severe NCL, in particular CLN1.

JNCL variant - CLN9. Two families in which the underlying gene is not known have been described [Schulz et al 2004].

Adult NCL (ANCL, Kuf's Disease)

Initial signs and symptoms usually appear around age 30 years, with death occurring about ten years later. Symptoms may appear as early as age 11 years or much later in adulthood. Ophthalmologic studies are normal.

The two major clinical phenotypes are:

  • Type A, characterized by progressive myoclonic epilepsy with dementia, ataxia, and late-occurring pyramidal and extrapyramidal signs. Seizures are often uncontrollable.
  • Type B, characterized by behavior abnormalities and dementia, which may be associated with motor dysfunction, ataxia, extrapyramidal signs, and suprabulbar (brain stem) signs.

In the presenile form with onset after age 50 years, dementia, cognitive decline, motor dysfunction, seizures, and suprabulbar signs are observed as well as mixed inclusions on EM (Table 2).

Autosomal dominant forms of adult-onset NCL have GROD observed on EM (Table 2) [Burneo et al 2003, Nijssen et al 2003]. The genetically defined cases of recessive adult-onset NCL include several individuals deficient in PPT1 enzyme activity [van Diggelen et al 2001, Ramadan et al 2007] and one family deficient in CTSD enzyme activity (unpublished). It is highly likely that a mild mutation in all known NCL genes could delay disease onset until adulthood.

Northern Epilepsy (NE, Progressive Epilepsy with Mental Retardation, EPMR)

Northern epilepsy is a specific phenotype caused by a particular mutation in CLN8, and is characterized by epilepsy with tonic-clonic or complex-partial seizures, slow intellectual deterioration, and motor dysfunction.

Vision problems are rare.

The frequency of the epileptic manifestations decreases after puberty, but slow cognitive decline continues throughout life. Some individuals have lived beyond age 60 years.

Genotype-Phenotype Correlations

Mutations in the following NCL-related genes can be associated with both early and late age of onset, the latter probably the result of greater amounts of residual protein activity.

  • CLN10/CTSD. Congenital, late-infantile, or teenage-/adult-onset NCL.
  • CLN1/PPT1. Infantile, late-infantile, juvenile, and adult-onset NCL.
  • CLN2/TPP1. Late-infantile, juvenile, and possibly later-onset NCL.
  • CLN5. Late-infantile variant, juvenile, and adult-onset NCL.
  • CLN8. Late-infantile variant NCL and EPMR.

Later ages of onset have not yet been described for CLN3 or CLN7/MFSD8.

Incidence and Prevalence

Neuronal ceroid-lipofuscinoses (NCLs) are the most common hereditary progressive neurodegenerative disease with a prevalence of approximately 1.5 to nine per million population.

The incidence of NCL ranges in different countries from 1.3 to seven per 100,000 live births.

Differential Diagnosis

For current information on availability of genetic testing for disorders included in this section, see GeneTests Laboratory Directory. —ED.

Infantile NCL. Other progressive neurologic diseases with onset from birth to age two years need to be considered. These include: Tay-Sachs disease (see Hexosaminidase A deficiency), Krabbe disease, Canavan disease, Rett syndrome, metachromatic leukodystrophy (see Arylsulfatase A deficiency), the infantile form of adrenoleukodystrophy (see Peroxisomal Biogenesis Disorders, Zellweger Syndrome Spectrum), Neimann-Pick disease types A and B (see Acid Sphingomyelinase Deficiency), and Leigh syndrome (see also Mitochondrial Disorders Overview). While some of these disorders are associated with cortical blindness, retinal involvement is rarely seen.

Late-infantile NCL. Other progressive neurologic diseases with onset from ages two to four years need to be considered. These include: epileptic encephalopathies, lysosomal storage disorders, mitochondrial disease, and leukodystrophies.

Juvenile NCL. In the initial stage when individuals present with visual loss, retinitis pigmentosa (RP) or cone-rod dystrophy may be considered. The ophthalmologic involvement of JNCL differs from classic RP in that the vision loss in JNCL is typically central at first (rather than peripheral) and rapidly progressive, with total blindness occurring in one to two years [Weleber 1998]. In contrast, RP is indolent and progresses slowly over decades. Other disorders in which a cone-rod retinal dystrophy occurs are: Bardet-Biedl syndrome, Joubert syndrome, juvenile nephronophthisis, and Alstrom syndrome, all of which can be distinguished from JNCL by clinical findings.

Behavioral changes may be seen in late-onset lysosomal storage diseases such as hexosaminidase A deficiency, X-linked adrenoleukodystrophy, and some of the organic acidemias.

Northern epilepsy (NE). NE needs to be distinguished from other neurologic conditions with seizures [Zupanc & Legros 2004]. Myoclonus is not a feature of NE, and thus a large number of disorders with myoclonic seizures and intellectual disability can be excluded. The clinical course of NE differs from Landau-Kleffner syndrome, Rasmussen syndrome, and epilepsy with electric status epilepticus during slow sleep. Tuberous sclerosis complex and the Sturge-Weber syndrome can be distinguished from NE on the basis of clinical and neuroradiologic features. Lack of pyramidal or extrapyramidal signs and lack of cerebellar ataxia distinguish NE from degenerative disorders such as: juvenile Huntington disease, PKAN (previously called Hallervorden-Spatz syndrome), juvenile GM2 gangliosidosis (see Hexosaminidase A deficiency), Niemann-Pick disease type C, giant axonal neuropathy, or neuronal intranuclear inclusion disease.

Adult Kuf’s disease. Progressive myoclonic epilepsies (see Lafora Progressive Myoclonus Epilepsy), Unverricht-Lundborg disease, juvenile myoclonic epilepsy (JME); mitochondrial disease, including MERRF (see also Mitochondrial Disease Overview); early onset dementias, Creutzfeldt-Jakob Disease (CJD) (see Genetic Prion Diseases) and dentatorubral-pallidoluysian atrophy (DRPLA).

Management

Evaluations Following Initial Diagnosis

To establish the extent of disease in an individual diagnosed with one of the neuronal ceroid-lipofuscinoses, the following evaluations are recommended:

  • Neurologic examination
  • Ophthalmologic examination
  • Developmental/cognitive and educational assessment
  • Genetic evaluation

Treatment of Manifestations

Symptomatic treatment can sometimes be successful in mitigating the manifestations of NCL. Seizures, sleep-related problems, malnutrition, gastroesophageal reflux, pneumonia, sialorrhea, hyperactivity and behavior problems, psychosis, anxiety, spasticity, Parkinson-like symptoms, and dystonia can be palliated.

Seizures. Antiepileptic drugs (AEDs) should be selected with caution. The stage of the disease, age of the affected individual, and quality of life are important to consider in evaluating the effectiveness of AEDs.

Lamotrigine (LTG) had a favorable effect on 23/28 individuals with JNCL, 13/19 being continued on monotherapy with 100% control, compared to 70% control for those receiving valproic acid (VPA), 60% control for VPA-clonazepam (CZP), and 60% control for LTG-CZP [Aberg et al 1999, Aberg et al 2000].

Other newer AEDs including levetiracetam and topiramate may also be beneficial [Author, personal experience].

Other. Benzodiazepines may be of benefit for seizures, anxiety, spasticity, and sleep disorders.

Trihexyphenydil improves dystonia and sialorrhea.

Doxepin improves sleep, mood, and gastric emptying.

Individuals with swallowing problems may benefit from placement of a gastric (G) tube.

Agents/Circumstances to Avoid

Carbamazepine (CZP) and phenytoin may increase seizure activity in NCL and may be associated with clinical deterioration.

Lamotrigine may exacerbate seizures and myoclonus especially in LINCL/CLN2.

In a series of 60 individuals with JNCL, valproic acid (VPA) was withdrawn in 20% and clonazepam (CZP) in 16% because of side effects [Aberg et al 2000].

  • Fifty percent of individuals receiving VPA had sleep disturbances or excessive sedation.
  • CZP stimulates salivation and respiratory secretions, increasing the risk of pneumonia in bedridden individuals, many of whom have gastroesophageal reflux. CZP is a sedative and can cause behavior disturbances.

Testing of Relatives at Risk

See Genetic Counseling for issues related to testing of at-risk relatives for genetic counseling purposes.

Therapies Under Investigation

Crystal et al [2004] initiated gene therapy for children with LINCL caused by mutations in CLN2. They administered a replication-deficient adeno-associated virus (AAV) vector expressing human CLN2 cDNA directly into the brains of children with either severe or moderate LINCL in an attempt to produce sufficient amounts of TPP-1, to prevent further loss of neurons and hence limit disease progression. The research is ongoing.

Stem cell therapy for phenotypes caused by mutations in CLN1 and CLN2 is in progress [Author, personal communication].

CystagonTM has been used in the treatment of individuals with mutations in CLN1 [Zhang et al 2001; Wisniewski et al, personal observation].

Search ClinicalTrials.gov for access to information on clinical studies for a wide range of diseases and conditions.

Other

Genetics clinics, staffed by genetics professionals, provide information for individuals and families regarding the natural history, treatment, mode of inheritance, and genetic risks to other family members as well as information about available consumer-oriented resources. See the GeneTests Clinic Directory.

Genetic Counseling

Genetic counseling is the process of providing individuals and families with information on the nature, inheritance, and implications of genetic disorders to help them make informed medical and personal decisions. The following section deals with genetic risk assessment and the use of family history and genetic testing to clarify genetic status for family members. This section is not meant to address all personal, cultural, or ethical issues that individuals may face or to substitute for consultation with a genetics professional. To find a genetics or prenatal diagnosis clinic, see the GeneTests Clinic Directory.

Mode of Inheritance

The NCLs are inherited in an autosomal recessive manner with the exception of adult NCL, which can be inherited in either an autosomal recessive or an autosomal dominant manner.

Risk to Family Members — Autosomal Recessive Inheritance

Parents of a proband

  • The parents of an affected child are obligate heterozygotes (i.e., carriers of one mutant allele).
  • Heterozygotes are asymptomatic.

Sibs of a proband

  • At conception, each sib of a proband has a 25% chance of being affected, a 50% chance of being an asymptomatic carrier, and a 25% chance of being unaffected and not a carrier.
  • Once an at-risk sib is known to be unaffected, the risk of his/her being a carrier is 2/3.
  • Heterozygotes are asymptomatic.

Offspring of a proband

  • Probands with INCL, LINCL, and classic JNCL do not reproduce.
  • Very rarely, individuals with atypical JNCL reproduce [Wisniewski et al 1998b]. The offspring of an individual with NCL are obligate heterozygotes (carriers) for a mutant allele causing NCL.

Other family members of a proband. Each sib of the proband's parents is at a 50% risk of being a carrier.

Carrier Detection

Carrier testing by DNA analysis is possible once the mutations in the underlying gene have been identified in the family.

Risk to Family Members — Autosomal Dominant Inheritance (adult NCL only)

Parents of a proband

  • Most individuals diagnosed with autosomal dominant adult NCL have an affected parent.
  • A proband with autosomal dominant adult NCL may have the disorder as the result of a new gene mutation. The proportion of cases caused by de novo mutations is unknown.
  • If the disease-causing mutation found in the proband cannot be detected in the DNA of either parent, two possible explanations are germline mosaicism in a parent or a de novo mutation in the proband. Although no instances of germline mosaicism have been reported, it remains a possibility.
  • Recommendations for the evaluation of parents of a proband with an apparent de novo mutation include molecular genetic testing of the identified mutation. Evaluation of parents may determine that one is affected but has escaped previous diagnosis because of failure by health care professionals to recognize the syndrome and/or a milder phenotypic presentation. Therefore, an apparently negative family history cannot be confirmed until appropriate evaluations have been performed.

Note: Although most individuals diagnosed with autosomal dominant adult NCL have an affected parent, the family history may appear to be negative because of failure to recognize the disorder in family members, early death of the parent before the onset of symptoms, or late onset of the disease in the affected parent.

Sibs of a proband

  • The risk to the sibs of the proband depends on the genetic status of the proband’s parents.
  • If a parent of the proband is affected, the risk to the sibs is 50%.
  • When the parents are clinically unaffected, the risk to the sibs of a proband appears to be low.
  • The sibs of a proband with clinically unaffected parents are still at increased risk (for the disorder) because of the possibility of reduced penetrance in a parent.
  • If the disease-causing mutation found in the proband cannot be detected in the DNA of either parent, the risk to sibs is low, but greater than that of the general population because of the possibility of germline mosaicism.

Offspring of a proband. Each child of an individual with autosomal dominant adult NCL has a 50% chance of inheriting the mutation.

Other family members of a proband. The risk to other family members depends on the status of the proband's parents. If a parent is affected, his or her family members may be at risk.

Related Genetic Counseling Issues

Family planning

  • The optimal time for determination of genetic risk, clarification of carrier status, and discussion of the availability of prenatal testing is before pregnancy.
  • It is appropriate to offer genetic counseling (including discussion of potential risks to offspring and reproductive options) to young adults who are affected, are carriers, or are at risk of being affected or carriers.

DNA banking is the storage of DNA (typically extracted from white blood cells) for possible future use. Because it is likely that testing methodology and our understanding of genes, mutations, and diseases will improve in the future, consideration should be given to banking DNA of affected individuals. See Image testing.jpg for a list of laboratories offering DNA banking.

Prenatal Testing

Prenatal testing is possible in pregnancies at 25% risk if biochemical studies in the proband have revealed deficient activity of the enzyme CTSD, PPT1, or the enzyme TPP-1, or if disease-causing mutations in any NCL genes have been identified in the proband and parents. In these instances, testing is performed on fetal cells obtained by chorionic villus sampling (CVS) at about ten to 12 weeks' gestation or amniocentesis usually performed at about 15 to 18 weeks' gestation.

Note: Gestational age is expressed as menstrual weeks calculated either from the first day of the last normal menstrual period or by ultrasound measurements.

Preimplantation genetic diagnosis (PGD) may be available for families in which the disease-causing mutations have been identified. For laboratories offering PGD, see Image testing.jpg.

Resources

GeneReviews staff has selected the following disease-specific and/or umbrella support organizations and/or registries for the benefit of individuals with this disorder and their families. GeneReviews is not responsible for the information provided by other organizations. For information on selection criteria, click here.

  • Batten Disease Family Association (BFDA)
    c/o Heather House
    Heather Drive
    Tadley Hampshire RG26 4QR
    United Kingdom
    Phone: 01603 760111; 01233 639526
    Email: info@bdfa-uk.org.uk; support@bdfa-uk.org.uk
  • Batten Disease Support and Research Association (BDSRA)
    166 Humphries Drive
    Reynoldsburg OH 43068
    Phone: 800-448-4570 (toll-free); 740-927-4298
    Email: bdsra1@bdsra.org
  • NCL Resource - A Gateway for Batten Disease
    MRC Laboratory for Molecular Cell Biology, University College London
    Gower Street
    London WC1E 6BT
    United Kingdom
    Phone: +00 44 207 679 7257
    Email: ncl-www@ucl.ac.uk
  • Children Living with Inherited Metabolic Diseases (CLIMB)
    Climb Building
    176 Nantwich Road
    Crewe CW2 6BG
    United Kingdom
    Phone: 0800-652-3181 (toll free); 0845-241-2172
    Fax: 0845-241-2174
    Email: info.svcs@climb.org.uk
  • Children's Brain Disease Foundation
    Parnassus Heights Medical Building
    350 Parnassus Avenue
    Suite 900
    San Francisco CA 94117
    Phone: 415-665-3003
    Fax: 415-665-3003
    Email: jrider6022@aol.com
  • National Tay-Sachs and Allied Diseases Association, Inc. (NTSAD)
    2001 Beacon Street
    Suite 204
    Boston MA 02135
    Phone: 800-906-8723 (toll-free)
    Fax: 617-277-0134
    Email: info@ntsad.org

Molecular Genetics

Information in the Molecular Genetics and OMIM tables may differ from that elsewhere in the GeneReview: tables may contain more recent information. —ED.

Table A. Neuronal Ceroid-Lipofuscinosis: Genes and Databases

Locus NameGene SymbolChromosomal LocusProtein NameLocus SpecificHGMD
CLN1PPT11p34​.2Palmitoyl-protein thioesterase 1Neuronal Ceroid Lipofuscinoses; NCL Mutations
Retina International Mutations of the Palmitoyl-Protein Thioesterase Gene (PPT CLN1) Gene
Finnish Disease Database
PPT1 homepage - Mendelian genes
PPT1
CLN2TPP111p15​.4Tripeptidyl-peptidase 1Neuronal Ceroid Lipofuscinoses; NCL Mutations
TPP1 homepage - Mendelian genes
TPP1
CLN3CLN316p11​.2BatteninNeuronal Ceroid Lipofuscinoses; NCL Mutations
Retina International Mutations of the CLN3 Gene
Finnish Disease Database
CLN3 homepage - Mendelian genes
CLN3
CLN4UnknownUnknownUnknown
CLN4DNAJC520q13​.33DnaJ homolog subfamily C member 5Neuronal Ceroid Lipofuscinoses; NCL Mutations
DNAJC5 @ LOVD
DNAJC5
CLN5CLN513q22​.3Ceroid-lipofuscinosis neuronal protein 5Neuronal Ceroid Lipofuscinoses; NCL Mutations
Finnish Disease Database
CLN5 homepage - Mendelian genes
CLN5
CLN6CLN615q23Ceroid-lipofuscinosis neuronal protein 6Neuronal Ceroid Lipofuscinoses; NCL Mutations
CLN6 homepage - Mendelian genes
CLN6
CLN7MFSD84q28​.2Major facilitator superfamily domain-containing protein 8Neuronal Ceroid Lipofuscinoses; NCL Mutations
MFSD8 homepage - Mendelian genes
MFSD8
CLN8CLN88p23​.3Protein CLN8Neuronal Ceroid Lipofuscinoses; NCL Mutations
Finnish Disease Database
CLN8 homepage - Mendelian genes
CLN8
CLN9UnknownUnknownUnknown
CLN10CTSD11p15​.5Cathepsin DNeuronal Ceroid Lipofuscinoses; NCL Mutations
CTSD homepage - Mendelian genes
CTSD
CLN11GRN17q21​.31GranulinsAlzheimer Disease & Frontotemporal Dementia Mutation Database
alsod/PGRN genetic mutations
GRN homepage - Mendelian genes
GRN
CLN12ATP13A21p36​.13Probable cation-transporting ATPase 13A2ATP13A2 @ LOVDATP13A2
CLN13CTSF11q13​.2Cathepsin FCTSF @ LOVDCTSF
CLN14KCTD77q11​.21BTB/POZ domain-containing protein KCTD7KCTD7 homepage - Mendelian genesKCTD7

Data are compiled from the following standard references: gene symbol from HGNC; chromosomal locus, locus name, critical region, complementation group from OMIM; protein name from UniProt. For a description of databases (Locus Specific, HGMD) to which links are provided, click here.

Table B. OMIM Entries for Neuronal Ceroid-Lipofuscinosis (View All in OMIM)

116840CATHEPSIN D; CTSD
138945GRANULIN PRECURSOR; GRN
162350CEROID LIPOFUSCINOSIS, NEURONAL, 4B, AUTOSOMAL DOMINANT; CLN4B
204200CEROID LIPOFUSCINOSIS, NEURONAL, 3; CLN3
204300CEROID LIPOFUSCINOSIS, NEURONAL, 4A, AUTOSOMAL RECESSIVE; CLN4A
204500CEROID LIPOFUSCINOSIS, NEURONAL, 2; CLN2
256730CEROID LIPOFUSCINOSIS, NEURONAL, 1; CLN1
256731CEROID LIPOFUSCINOSIS, NEURONAL, 5; CLN5
600143CEROID LIPOFUSCINOSIS, NEURONAL, 8; CLN8
600722PALMITOYL-PROTEIN THIOESTERASE 1; PPT1
601780CEROID LIPOFUSCINOSIS, NEURONAL, 6; CLN6
603539CATHEPSIN F; CTSF
606725CLN6 GENE; CLN6
607042CLN3 GENE; CLN3
607837CLN8 GENE; CLN8
607998TRIPEPTIDYL PEPTIDASE I; TPP1
608102CLN5 GENE; CLN5
609055CEROID LIPOFUSCINOSIS, NEURONAL, 9; CLN9
610127CEROID LIPOFUSCINOSIS, NEURONAL, 10; CLN10
610513ATPase, TYPE 13A2; ATP13A2
610951CEROID LIPOFUSCINOSIS, NEURONAL, 7; CLN7
611124MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 8; MFSD8
611203DNAJ/HSP40 HOMOLOG, SUBFAMILY C, MEMBER 5; DNAJC5
611725POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING PROTEIN 7; KCTD7
611726EPILEPSY, PROGRESSIVE MYOCLONIC 3, WITH OR WITHOUT INTRACELLULAR INCLUSIONS; EPM3
614706CEROID LIPOFUSCINOSIS, NEURONAL, 11; CLN11

Molecular Genetic Pathogenesis

Both human and animal forms of the disorders can be divided into two major groups, based on the nature of the material accumulated in lysosomes: 1) those characterized by the prominent storage of saposins (SAPs) A and D; and, 2) those showing the predominance of subunit c of mitochondrial ATP synthase accumulation. In addition to proteins, storage material in NCLs contains other components including lipids, metals, dolichyl pyrophosphoryl oligosaccharides, and lipid thioesters.

The relation between genetic defects associated with the major NCL forms, the accumulation of storage material, and tissue dysfunction and/or damage is still unknown. Furthermore, all individuals with NCLs manifest lysosomal storage in many tissues and organs, but severe degeneration and cell loss involve mostly neuronal cells. Thus, it appears that NCL proteins may be most critical for the metabolism of neurons. It is uncertain whether this phenomenon is caused by the specific metabolic requirements of a neuron as a postmitotic cell or results from the properties of NCL proteins per se.

The spectrum of mutations present in NCL is listed in the NCL Mutation Database www.ucl.ac.uk/ncl (see also Table A).

PPT1

Normal allelic variants. The gene has nine exons spanning 25 kb.

Pathologic allelic variants. More than 40 mutations of PPT1 are known. The common mutations are p.Arg122Trp and p.Arg151X [Das et al 1998]; the others are uncommon or private mutations.

Table 4. Selected PPT1 Pathologic Allelic Variants

DNA Nucleotide ChangeProtein Amino Acid ChangeReference Sequences
c.364A>Tp.Arg122TrpNM_000310​.2
NP_000301​.1
c.451C>Tp.Arg151X

See Quick Reference for an explanation of nomenclature. GeneReviews follows the standard naming conventions of the Human Genome Variation Society (www​.hgvs.org).

Normal gene product. PPT1 is a globular enzyme consisting of six parallel β strands alternating with α helices organized in a structure known as the α/β hydrolast fold typical of lipases. A large insertion between β6 and β7 (amino acid residues 140-223) forms a second domain that forms most of the fatty acid-binding site. Catalytic active site residues are: Ser115, Asp233, and His289. PPT1 is a housekeeping enzyme present in the lysosomes of many tissues. It removes long-chain fatty acids, usually palmitate, from cystine residues.

Based on the results of crystallographic and molecular modeling studies of recombinant bovine PPT-1 enzyme, a mechanism has been hypothesized to explain the milder INCL phenotype in individuals with PPT1 mutations who retain low-level thioesterase activity [Bellizzi et al 2000].

Abnormal gene product. Mutations affect PPT1 in different ways. For some the protein is truncated, lacking its catalytic site; for others critical residues, such as within the catalytic site, are absent or altered.

TPP1

Normal allelic variants. TPP1 has 13 exons.

Pathologic allelic variants.: More than 50 mutations of TPP1 are known. The common mutations are p.Arg208X and c.509-1G>C [Zhong et al 1998, Sleat et al 1999]; the others are uncommon or private mutations.

Table 5. Slected TPP1 Pathologic Allelic Variants

DNA Nucleotide Change
(Alias 1)
Protein Amino Acid ChangeReference Sequences
c.622C>Tp.Arg208XNM_000391​.3
NP_000382​.3
c.509-1G>C (IVS5-1G>C)--

See Quick Reference for an explanation of nomenclature. GeneReviews follows the standard naming conventions of the Human Genome Variation Society (www​.hgvs.org).

1. Variant designation that does not conform to current naming conventions

Normal gene product. TPP-1 consists of 365 amino acids. It is a lysosomal serine-carboxyl peptidase that sequentially removes N-terminal tripeptides from small peptides, including several peptide hormones.

Abnormal gene product. Mutations affect TPP1 in different ways. For some the protein is truncated, lacking its catalytic site; for others critical residues, such as within the catalytic site, are absent or altered.

CLN3

Normal allelic variants. The gene contains 15 exons.

Pathologic allelic variants. More than 40 mutations are presently known. The common mutation is a c. c.461-280_677+382del [Munroe et al 1997]; the others are uncommon or private mutations. The c.461-280_677+382del mutation deletes 217 bp of coding sequence, but the breakpoints are in intronic regions and the total deletion is about 1-kb and includes exons 7 and 8. The genomic DNA designation is NG_008654.1:g.10373_11338del.

Table 6. Selected CLN3 Pathologic Allelic Variants

DNA Nucleotide ChangeProtein Amino Acid ChangeReference Sequences
c.461-280_677+382del (c.461_677del)p.Gly154AlafsX29NM_001042432​.1
NP_001035897​.1
c.88G>Ap.Glu295Lys

See Quick Reference for an explanation of nomenclature. GeneReviews follows the standard naming conventions of the Human Genome Variation Society (www​.hgvs.org).

Normal gene product. The protein has 438 amino acids and its function is unknown. CLN3 is most likely to be present in the lysosomal/endosomal membrane, and may also be in the Golgi complex and on the plasma membrane. In addition, CLN3 undergoes post-translational modification

Abnormal gene product. Although the function of CLN3 remains elusive, it is apparent that genetic alterations in CLN3 may have a direct effect on lysosomal function. The most common mutation, the 1 kb deletion, does not completely abolish CLN3 function [Kitzmüller et al 2008].

CLN5

Normal allelic variants. The gene contains four exons.

Pathologic allelic variants. More than ten mutations are known. The first affected individuals were in Finland, but many cases have now been reported elsewhere. The mutation p.Tyr392X is observed in 94% of individuals with CLN5 who are of Finnish descent; the mutation p.Trp75X also segregates in affected individuals of Finnish descent. Other mutations are less common.

Table 7. Selected CLN5 Pathologic Allelic Variants

DNA Nucleotide ChangeProtein Amino Acid ChangeReference Sequences
c.225G>Ap.Trp75XNM_006493​.1
NP_006484​.1
c.1175_1176delATp.Tyr392X

See Quick Reference for an explanation of nomenclature. GeneReviews follows the standard naming conventions of the Human Genome Variation Society (www​.hgvs.org).

Normal gene product. The normal protein has 407 amino acids.

Abnormal gene product. CLN5 is a lysosomal transmembrane or soluble protein of unknown function.

CLN6

Normal allelic variants. The gene has seven exons.

Pathologic allelic variants. Many mutations have been identified, including missense and nonsense mutations, small deletions or insertions, and splice site mutations. Affected individuals have been identified in many countries. The mutation p.Glu72X is common in persons from Costa Rica. The 1-bp insertion c.316dupC is associated with families from Pakistan; p.Ile154del may be common in Portugal. See Table 8.

Table 8. Selected CLN6 Pathologic Allelic Variants

DNA Nucleotide Change
(Alias 1)
Protein Amino Acid ChangeReference Sequences
c.214G>Tp.Glu72XNM_017882​.1
NP_060352​.1
c.316dupC
(c.316insC)
p.Arg106ProfsX26
c.460_462delATCp.Ile154del

See Quick Reference for an explanation of nomenclature. GeneReviews follows the standard naming conventions of the Human Genome Variation Society (www​.hgvs.org).

1. Variant designation that does not conform to current naming conventions

Normal gene product. This transmembrane protein of unknown function resides in the endoplasmic reticulum (ER) [Mole et al 2004].

Abnormal gene product. Heine et al [2004] discuss the defective endoplasmic reticulum resulting from CLN6 mutations.

MFSD8

Normal allelic variants. The gene has 13 exons.

Pathologic allelic variants. Many mutations have been reported. Mutations in MFSD8 were originally identified in persons of Turkish origin. However, cases have now been described from many countries. The most common mutation is p.Thr294Lys, which is associated with Roma Gypsies originating from the Czech Republic. Another common mutation is c.754+2T>A. See Table 9.

Table 9. Selected MFSD8 Pathologic Allelic Variants

DNA Nucleotide Change Protein Amino Acid Change
c.881C>A 1p.Thr294Lys 
c.754+2T>A 2(Predicted altered splicing)

See Quick Reference for an explanation of nomenclature. GeneReviews follows the standard naming conventions of the Human Genome Variation Society (www​.hgvs.org).

1. Kousi et al [2009]

2. Siintola et al [2007]

Normal gene product. MFSD8 is a member of the major facilitator superdomain family of transporter proteins.

Abnormal gene product. Unknown.

CLN8

Normal allelic variants. The gene has three exons.

Pathologic allelic variants. Many mutations have been reported in persons from several countries, including Turkey and Italy.

One group of individuals of Finnish origin, who are homozygous for the missense mutation p.Arg24Gly, has the allele-specific disease, Northern epilepsy/EPMR disease [Ranta et al 2001]. Other mutations in CLN8 give rise to the vLINCL phenotype.

Table 10. Selected CLN8 Pathologic Allelic Variants

DNA Nucleotide ChangeProtein Amino Acid ChangeReference Sequence
c.70C>G p.Arg24GlyNM_018941​.3
NP_061764​.2

See Quick Reference for an explanation of nomenclature. GeneReviews follows the standard naming conventions of the Human Genome Variation Society (www​.hgvs.org).

Normal gene product. This protein of 286 amino acids is localized to the ER and ER Golgi intermediate compartment.

Abnormal gene product. Unknown

CLN10

Normal allelic variants. The gene has nine exons.

Pathologic allelic variants. Only four mutations are known. None is common.

Normal gene product. Cathepsin D is an aspartate protease.

Abnormal gene product. Unknown

References

Medical Genetic Searches: A specialized PubMed search designed for clinicians that is located on the PubMed Clinical Queries page Image PubMed.jpg

Literature Cited

  1. Aberg L, Kirveskari E, Santavuori P. Lamotrigine therapy in juvenile neuronal ceroid lipofuscinosis. Epilepsia. 1999;40:796–9. [PubMed: 10368082]
  2. Aberg LE, Backman M, Kirveskari E, Santavuori P. Epilepsy and antiepileptic drug therapy in juvenile neuronal ceroid lipofuscinosis. Epilepsia. 2000;41:1296–302. [PubMed: 11051125]
  3. Backman ML, Santavuori PR, Aberg LE, Aronen ET. Psychiatric symptoms of children and adolescents with juvenile neuronal ceroid lipofuscinosis. J Intellect Disabil Res. 2005;49:25–32. [PubMed: 15634309]
  4. Bellizzi JJ 3rd, Widom J, Kemp C, Lu JY, Das AK, Hofmann SL, Clardy J. The crystal structure of palmitoyl protein thioesterase 1 and the molecular basis of infantile neuronal ceroid lipofuscinosis. Proc Natl Acad Sci U S A. 2000;97:4573–8. [PMC free article: PMC18274] [PubMed: 10781062]
  5. Burneo JG, Arnold T, Palmer CA, Kuzniecky RI, Oh SJ, Faught E. Adult-onset neuronal ceroid lipofuscinosis (Kufs disease) with autosomal dominant inheritance in Alabama. Epilepsia. 2003;44:841–6. [PubMed: 12790899]
  6. Crystal RG, Sondhi D, Hackett NR, Kaminsky SM, Worgall S, Stieg P, Souweidane M, Hosain S, Heier L, Ballon D, Dinner M, Wisniewski K, Kaplitt M, Greenwald BM, Howell JD, Strybing K, Dyke J, Voss H. Clinical protocol. Administration of a replication-deficient adeno-associated virus gene transfer vector expressing the human CLN2 cDNA to the brain of children with late infantile neuronal ceroid lipofuscinosis. Hum Gene Ther. 2004;15:1131–54. [PubMed: 15610613]
  7. Das AK, Becerra CH, Yi W, Lu JY, Siakotos AN, Wisniewski KE, Hofmann SL. Molecular genetics of palmitoyl-protein thioesterase deficiency in the U.S. J Clin Invest. 1998;102:361–70. [PMC free article: PMC508894] [PubMed: 9664077]
  8. Gao H, Boustany RM, Espinola JA, Cotman SL, Srinidhi L, Antonellis KA, Gillis T, Qin X, Liu S, Donahue LR, Bronson RT, Faust JR, Stout D, Haines JL, Lerner TJ, MacDonald ME. Mutations in a novel CLN6-encoded transmembrane protein cause variant neuronal ceroid lipofuscinosis in man and mouse. Am J Hum Genet. 2002;70:324–35. [PMC free article: PMC384912] [PubMed: 11791207]
  9. Hartikainen JM, Ju W, Wisniewski KE, Moroziewicz DN, Kaczmarski AL, McLendon L, Zhong D, Suarez CT, Brown WT, Zhong N. Late infantile neuronal ceroid lipofuscinosis is due to splicing mutations in the CLN2 gene. Mol Genet Metab. 1999;67:162–8. [PubMed: 10356316]
  10. Heine C, Koch B, Storch S, Kohlschutter A, Palmer DN, Braulke T. Defective endoplasmic reticulum-resident membrane protein CLN6 affects lysosomal degradation of endocytosed arylsulfatase A. J Biol Chem. 2004;279:22347–52. [PubMed: 15010453]
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Chapter Notes

Author Notes

The original author, Dr. Wisniewski, was a nationally and internationally known pediatric neurologist and neuropathologist/neurobiologist. She was the author or co-author of over 300 publications and numerous books and book chapters in the field of progressive neurogenetic diseases and intellectual and developmental disabilities.

Current author, Sara Mole PhD, is a research scientist with over 17 years experience in the neuronal ceroid lipofuscinoses. She curates the NCL Mutation Database, part of the NCL Resource web site, and is an author of many scientific articles, reviews and book chapters, including editor of a book on Batten disease.

Current author, Ruth Williams MD, is a pediatric neurologist specializing in epilepsy, with many years of special interest in the NCLs.

Author History

Sara E Mole, PhD (2010-present)
Ruth E Williams, MD (2010-present)
Krystyna E Wisniewski, MD, PhD; New York State Institute for Basic Research in Developmental Disabilities (2001-2010)

Revision History

  • 2 March 2010 (me) Comprehensive update posted live
  • 17 May 2006 (me) Comprehensive update posted to live Web site
  • 15 August 2005 (bp) Revision: sequence analysis for CLN5 and CLN8 clinically available
  • 19 November 2004 (bp) Revision: CLN5 and CLN8 sequence analysis
  • 27 January 2004 (me) Comprehensive update posted to live Web site
  • 12 June 2003 (kw) Revision: testing
  • 10 October 2001 (me) Review posted to live Web site
  • 20 February 2001 (kw) Original submission
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