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Pagon RA, Bird TD, Dolan CR, et al., editors. GeneReviews™ [Internet]. Seattle (WA): University of Washington, Seattle; 1993-.
Summary
Disease characteristics. Usher syndrome type II is characterized by congenital (i.e., prelingual) bilateral sensorineural hearing loss that is mild to moderate in the low frequencies and severe to profound in the higher frequencies, intact vestibular responses, and retinitis pigmentosa (RP). RP is progressive, bilateral, symmetric retinal degeneration that begins with night blindness and constricted visual fields (tunnel vision) and eventually includes decreased central visual acuity; the rate and degree of vision loss vary within and among families.
Diagnosis/testing. The diagnosis of Usher syndrome type II is established on clinical grounds using electrophysiologic and subjective tests of hearing and retinal function. Three genes are known to be associated with Usher syndrome type II: USH2A (accounting for 80% of cases), GPR98 (VLGR1) (~15% of cases), and DFNB31 (<5% of cases). A fourth locus has been provisionally mapped to 15q. Molecular genetic testing for USH2A, GPR98, and DFNB31 is available clinically.
Management. Treatment of manifestations: Early fitting of hearing aids and speech training to normalize language.
Surveillance: Routine auditory evaluation to detect changes that may require modifications to hearing aids; routine ophthalmologic evaluation to detect potentially treatable complications such as cataracts.
Agents/circumstances to avoid: Tunnel vision and night blindness can increase the likelihood of accidental injury. Competition in sports requiring a full range of vision may be difficult and possibly dangerous. Progressive loss of peripheral vision impairs the ability to safely drive a car.
Evaluation of relatives at risk: The hearing of at-risk sibs should be assessed as soon after birth as possible to allow early diagnosis and treatment of hearing loss.
Genetic counseling. Usher syndrome type II is inherited in an autosomal recessive manner. Each subsequent pregnancy of a couple who has had a child with Usher syndrome type II has a 25% chance of resulting in an affected child, a 50% chance of resulting in an unaffected child who is a carrier, and a 25% chance of resulting in an unaffected child who is not a carrier. Prenatal testing is possible for pregnancies at increased risk for USH2A if the disease-causing mutations have been identified in the family.
Diagnosis
Clinical Diagnosis
A diagnosis of Usher syndrome type II (USH2) requires the following:
- Congenital (i.e., prelingual) sensorineural hearing loss that is mild to moderate in the low frequencies and severe to profound in the higher frequencies (see Deafness and Hereditary Hearing Loss Overview)
- Intact vestibular responses
- Retinitis pigmentosa (RP)
- Normal general health and intellect; otherwise normal physical examination
- A family history compatible with autosomal recessive inheritance
Molecular Genetic Testing
Genes. Subtypes of Usher syndrome type II and associated genes:
- Usher syndrome type 2A. Alterations in USH2A account for approximately 80% of all Usher syndrome type II
- Usher syndrome type 2C. Alterations in GPR98 (previously known as VLGR1) [Weston et al 2004]
- Usher syndrome type 2D. Alterations in DFNB31 [Ebermann et al 2007]
Evidence for further locus heterogeneity
- USH2B. Hmani-Aifa et al [2009] provide evidence that the USH2B locus does not exist; mutations in GPR98 have now been found in the Tunisian family originally used to map USH2B.
- A fourth locus associated with Usher syndrome type II has been provisionally mapped to 15q in a consanguineous Tunisian family [Ben Rebeh et al 2008].
Clinical testing
- Sequence analysis
- USH2A. Sequence analysis of exons 1-21 of USH2A and flanking intronic regions identified one or two mutations in 35% to 65% of individuals with clinical findings consistent with Usher syndrome type II [Ouyang et al 2004, Pennings et al 2004b, Seyedahmadi et al 2004, van Wijk et al 2004, Bernal et al 2005, Maubaret et al 2005]. Exon 21 is alternatively spliced, giving rise to both short and long isoforms. Analysis of exons 22-72 identified a homozygous mutation in one patient and a second mutation in 14 of 24 Spanish patients previously shown to have a mutation in the first 21 exons [Aller et al 2006]. Analysis of all 73 exons in Scandinavian individuals identified one or two mutations in 75% [Dreyer et al 2008].
- GPR98 (USH2C). Sequence analysis identified four mutations in GPR98 in individuals from three multiplex families and in two individuals who represent simplex cases of Usher syndrome type 2C [Weston et al 2004].
- DFNB31 (USH2D). Sequence analysis of DFNB31 identified a nonsense mutation in exon 1 and an exon 2 splice donor site mutation in people with USH2 from a German family [Ebermann et al 2007].
- Deletion/duplication analysis
- USH2A. Dreyer et al [2008] reported numerous mutations in USH2A including a multiexonic deletion involving exons 21-32.
- GPR98. Hilgert et al [2009] reported a large deletion g.371657_507673del of exons 84 and 85.
Table 1. Summary of Molecular Genetic Testing Used in Usher Syndrome Type II (USH2)
| Gene Symbol (Locus) | Percent of Usher Syndrome Type II | Test Method | Mutations Detected | Mutation Detection Frequency by Gene and Test Method 1 | Test Availability |
|---|---|---|---|---|---|
| USH2A (USH2A) | 80% | Sequence analysis | Sequence variants 2 | ~35%-75% 3 | Clinical![]() |
| Deletion/ duplication analysis 4 | Exonic or whole-gene deletions | Unknown | |||
| GPR98 (USH2C) | ~15% | Sequence analysis | Sequence variants 2 | Unknown | Clinical ![]() |
| Deletion / duplication analysis 4 | Exonic or whole-gene deletions | Unknown | |||
| DFNB31 (USH2D) | <5% | Sequence analysis | Sequence variants 2 | Unknown | Clinical ![]() |
| Deletion/ duplication analysis 4 | Exonic or whole-gene deletions 5 |
Test Availability refers to availability in the GeneTests™ Laboratory Directory. GeneReviews designates a molecular genetic test as clinically available only if the test is listed in the GeneTests Laboratory Directory by either a US CLIA-licensed laboratory or a non-US clinical laboratory. GeneTests does not verify laboratory-submitted information or warrant any aspect of a laboratory's licensure or performance. Clinicians must communicate directly with the laboratories to verify information.
1. The ability of the test method used to detect a mutation that is present in the indicated gene
2. Examples of mutations detected by sequence analysis may include small intragenic deletions/insertions and missense, nonsense, and splice site mutations.
3. Frequency of detecting one or both mutant alleles in USH2A
4. Testing that identifies deletions/duplications not readily detectable by sequence analysis of genomic DNA; a variety of methods including quantitative PCR, long-range PCR, multiplex ligation-dependent probe amplification (MLPA), or targeted array GH (gene/segment-specific) may be used. A full array GH analysis that detects deletions/duplications across the genome may also include this gene/segment. See array GH.
5. No deletions or duplications involving DFNB31 have been reported to cause Usher syndrome type 2D. (Note: By definition, deletion/duplication analysis identifies rearrangements that are not identifiable by sequence analysis of genomic DNA.)
Interpretation of test results. For issues to consider in interpretation of sequence analysis results, click here.
Testing Strategy
Establishing the diagnosis in a proband. If the clinical findings are compatible with the diagnosis of Usher syndrome 2, to confirm/establish the diagnosis, the order of molecular genetic testing is as follows:
- 1.
Sequence analysis of USH2A
- 2.
Deletion/duplication analysis of USH2A
- 3.
Sequence analysis of GPR98 (USH2C)
- 4.
Deletion/duplication analysis of GPR98 (USH2C)
- 5.
Sequence analysis of DFNB31 (USH2D)
Carrier testing for at-risk relatives requires prior identification of the disease-causing mutations in the family.
Note: Carriers are heterozygotes for this autosomal recessive disorder and are not at risk of developing the disorder.
Prenatal diagnosis and preimplantation genetic diagnosis (PGD) for at-risk pregnancies require prior identification of the disease-causing mutations in the family.
Note: It is the policy of GeneReviews to include in GeneReviews™ chapters any clinical uses of testing available from laboratories listed in the GeneTests™ Laboratory Directory; inclusion does not necessarily reflect the endorsement of such uses by the author(s), editor(s), or reviewer(s).
Genetically Related (Allelic) Disorders
USH2A. Mutations in USH2A are also a common cause of nonsyndromic autosomal recessive retinitis pigmentosa (arRP). (See Retinitis Pigmentosa Overview.) Seyedahmadi et al [2004] found USH2A mutations in 12% of individuals with arRP.
Rivolta et al [2000] observed a novel USH2A missense mutation, p.Cys759Phe, in individuals with arRP; many of these individuals had normal hearing even when their second mutation was known to be associated with Usher syndrome type II (including the common p.Glu767SerfsX21 mutation). However, homozygosity of p.Cys759Phe in unaffected individuals indicates that this mutation may not be sufficient to cause arRP [Bernal et al 2003]. This mutation was not found in Israeli individuals with arRP, but compound heterozygotes for an USH2A mutation and other novel sequence changes in exons 22-72 were reported, in particular for p.Arg4674Gly [Kaiserman et al 2008].
GPR98 (VLGR1). A nonsense mutation in GPR98 was found in one of 48 families with febrile seizures [Nakayama et al 2002], suggesting that such mutations are unlikely to be a common cause of febrile seizures in humans. However, the Frings mouse, which is prone to audiogenic seizures, has a spontaneous mutation in Vlgr1 [Skradski et al 2001].
DFNB31. Mutations in DFNB31 are also associated with nonsyndromic autosomal recessive hearing loss [Mburu et al 2003, Tlili et al 2005].
Clinical Description
Natural History
The hearing loss in Usher syndrome type II (USH2) is congenital and bilateral, occurring predominantly in the higher frequencies and ranging from mild to severe. The degree of hearing loss varies within and among families; however, the 'sloping' audiogram is characteristic of Usher syndrome type II. The hearing loss may be perceived by the affected individual as progressing over time because speech perception decreases. This perception may be caused by diminished vision that interferes with subconscious lip reading.
The clinical picture of Usher syndrome type II is complicated; subtle variations within the Usher syndrome type II hearing phenotype have been observed in several Dutch studies. In the first, three of 13 persons with Usher syndrome type II had a mild but definite progression of hearing loss unrelated to presbycusis; these three families showed linkage to USH2A and not to USH3, the locus associated with Usher syndrome type III. A subsequent cross-sectional study of 27 persons with Usher syndrome type 2A confirmed by linkage analysis compared hearing threshold against age; significant progression of hearing impairment was observed but at a much slower rate than reported for Usher syndrome type III [Pennings et al 2003]. In contrast, in a large study of 125 individuals with Usher syndrome type II, Reisser et al [2002] found no clinically relevant hearing loss over a span of up to 17 years.
To help resolve these differences, Sadeghi et al [2004] compared serial audiograms of individuals with the USH2A phenotype (group 1) with those of individuals with a non-USH2A Usher syndrome type II phenotype (group 2). They found significantly worse thresholds in group 1 than in group 2 after the second decade. Also, in group 1, progression started earlier and was more pronounced than in group 2. These results suggest that the USH2A auditory phenotype may be different from that of other subtypes of Usher syndrome type II.
Retinitis pigmentosa (RP) is a progressive, bilateral, symmetric degeneration of the retina that initiates at the periphery; rods (photoreceptors active in the dark-adapted state) are mainly affected first, causing night blindness and constricted visual fields (tunnel vision). Cones (photoreceptors active in the light-adapted state) may also be involved [Gregory-Evans & Bhattacharya 1998]. Visual fields continue to narrow throughout life, but the rate and degree of loss among individuals vary greatly between and within families. A visual field of five to ten degrees is common for a person with Usher syndrome type II age 30-40 years. Visual impairment increases significantly each year [Iannaccone et al 2004, Pennings et al 2004a]. However, it is unusual for the typical individual with Usher syndrome type II to become completely blind, although cataracts sometimes reduce central vision to light/dark perception only.
RP age of onset as well as tooth-enamel dysplasia may be subtle clinical indicators that can be used in conjunction with linkage analysis to subtype families with Usher syndrome type II on a research basis. Enamel defects were also reported in a child with Usher syndrome type I [Balmer & Fayle 2007].
Heterozygotes. Heterozygotes are asymptomatic; however, they may exhibit:
- Audiograms that are not sensitive or specific enough for carrier detection
- Slightly subnormal electrooculographies (EOGs). The clinical EOG is an electrophysiologic test of function of the oculomotor system. Electrodes are placed on each side of the eye, and the patient, while keeping the head still, moves his or her eyes back and forth alternating between two flashing red lights. The EOG is redundant with the ERG in most retinal disorders. The advantage of the EOG, however, is that the electrodes do not touch the surface of the eye.
Genotype-Phenotype Correlations
Bernal et al [2005] performed ophthalmologic, vestibular, and audiometric examinations of affected individuals in 13 Spanish families with USH2A; in eight families, both mutations were identified and in five, only one was identified. No genotype-phenotype correlations were observed within or between families.
Schwartz et al [2005] did not observe any genotype-phenotype correlations between individuals with mutations in USH2A and those with mutations in GPR98; however, only three sibs with mutations in GPR98 were evaluated. They found a wide spectrum of photoreceptor disease with more rod than cone dysfunction, and both intra- and interfamilial variation for Usher syndrome type 2A.
Nomenclature
USH2B. Hmani-Aifa et al [2009] provide evidence that the USH2B locus does not exist; mutations in GPR98 (USH2C) have now been found in the Tunisian family originally used to map USH2B.
Prevalence
The prevalence of Usher syndrome in the general US population has been conservatively estimated at 4.4:100,000; the carrier frequency may be as high as 1:70.
The prevalence of Usher syndrome in persons of Scandinavian descent has been estimated at around 3.6:100,000.
Usher syndrome has been estimated to be responsible for 3%-6% of all childhood deafness and approximately 50% of all deaf-blindness.
The above estimates were made prior to 1989, when Möller et al [1989] subdivided Usher syndrome into Usher syndrome type I (USH1) and type II (USH2), and before the recognition of Usher syndrome type III (USH3). The specialized educational requirements of the congenitally deaf have historically rendered the population with USH1 more accessible for study by researchers. Persons with USH2 or USH3 communicate orally and are mainstreamed into regular schools; thus, the prevalence of USH2 and USH3 in the general population cannot be estimated as accurately as that of USH1. Often, persons with USH2 are not diagnosed until early adulthood, when progressive RP becomes debilitating. The true prevalence of USH2 in the general population is not currently known.
More recently, the prevalence of Usher syndrome in Heidelberg, Germany and its suburbs has been calculated to be 6.2:100,000 [Spandau & Rohrschneider 2002]. In that study, the ratio of USH1 to USH2 was 1:3.
Differential Diagnosis
For current information on availability of genetic testing for disorders included in this section, see GeneTests Laboratory Directory. —ED.
Nonsyndromic hearing loss (NSHL). Often, a family with more than one affected sib is thought to have NSHL (see Deafness and Hereditary Hearing Loss Overview) until the oldest is diagnosed with RP (see Retinitis Pigmentosa Overview). Subsequent visual evaluation reveals the presymptomatic early stages of RP in younger affected sibs. Mutations in genes for NSHL and RP can be inherited independently by a single individual whose symptoms mimic those of Usher syndrome. NSHL and RP are both relatively common, with frequencies at 1:1000 and 1:4000, respectively. Larger families lessen the statistical probability of this occurrence, because at least one sibling is likely to inherit one gene without the other.
Usher syndrome type I (USH1). USH1 is characterized by congenital bilateral profound sensorineural hearing loss, vestibular areflexia, and adolescent-onset retinitis pigmentosa. One of the most important clinical distinctions between USH1 and USH2 is that children with USH1 are usually delayed in walking until age 18 months to two years because of vestibular involvement, whereas children with USH2 usually begin walking at approximately one year of age.
Usher syndrome type III (USH3). USH3 is characterized by postlingual progressive sensorineural hearing loss, late-onset RP, and variable impairment of vestibular function [Plantinga et al 2005]. Mutations in USH3 are causative [Fields et al 2002, Aller et al 2004]. Persons with USH3 may have symptoms that mimic USH2, especially early in the progression of the disease [Pennings et al 2003].
Deafness-dystonia-optic neuronopathy (DDON). Males with deafness-dystonia-optic neuronopathy (DDON) syndrome have prelingual or postlingual sensorineural hearing impairment in early childhood, slowly progressive dystonia or ataxia in the teens, slowly progressive decreased visual acuity from optic atrophy beginning approximately age 20 years, and dementia beginning at approximately age 40 years. Psychiatric symptoms such as personality change and paranoia may appear in childhood and progress. The hearing impairment appears to be constant in age of onset and progression, whereas the neurologic, visual, and neuropsychiatric signs vary in degree of severity and rate of progression. Females may have mild hearing impairment and focal dystonia. Mutations in TIMM8A are causative. Inheritance is X-linked.
Individuals with DDON syndrome may initially be suspected of having Usher syndrome [Kimberling W 2005, personal communication] because the hearing impairment in DDON syndrome may be congenital and the hearing impairment in Usher syndrome type II may be progressive [Sadeghi et al 2004].
Other. Viral infections, diabetic neuropathy, and syndromes involving mitochondrial defects can all produce concurrent symptoms of hearing loss and RP.
Note to clinicians: For a patient-specific ‘simultaneous consult’ related to this disorder, go to
, an interactive diagnostic decision support software tool that provides differential diagnoses based on patient findings (registration or institutional access required).
Management
Evaluations Following Initial Diagnosis
To establish the extent of disease in an individual diagnosed with Usher syndrome type II (USH2), the following evaluations are recommended:
- Audiology. Otoscopy, puretone audiometry, assessment of speech perception, and, in some cases, auditory brain stem response (ABR) and distortion product oto-acoustic emission (DPOAE)
- Vestibular function. Rotary chair, calorics, electronystagmography, and computerized posturography
- Ophthalmology. Funduscopy, visual acuity, visual field (Goldmann perimetry), electroretinography (ERG)
Treatment of Manifestations
Hearing. Hearing aids are helpful. Young children can benefit from early fitting of hearing aids and speech training to normalize language.
Environmental trauma (e.g., noise) or a genetic susceptibility (e.g., presbycusis) in addition to the congenital, stable deficit of USH2 may combine to produce severe-to-profound hearing loss in older individuals with USH2; in such cases, cochlear implantation may be warranted.
Vision. See Retinitis Pigmentosa Overview: Management.
Tunnel vision and night blindness can increase the likelihood of accidental injury.
Surveillance
Routine auditory evaluation is recommended in order to detect changes that may require modifications to hearing aids.
Routine ophthalmologic evaluation is recommended in order to detect potentially treatable complications such as cataracts.
Agents/Circumstances to Avoid
Competition in various sports requiring a full range of vision may be difficult and possibly dangerous.
Progressive loss of peripheral vision impairs the ability to safely drive a car.
Evaluation of Relatives at Risk
It is appropriate to evaluate the hearing of all sibs at risk for Usher syndrome type II with ABR or DPOAE as soon after birth as possible.
See Genetic Counseling for issues related to evaluation of at-risk relatives for genetic counseling purposes.
Therapies Under Investigation
Search ClinicalTrials.gov for access to information on clinical studies for a wide range of diseases and conditions. Note: There may not be clinical trials for this disorder.
Other
Vitamin A supplements. Although treatment with vitamin A palmitate may limit the progression of RP in some persons, no formal studies have evaluated its effectiveness in Usher syndrome type II. Vitamin A is fat soluble and not excreted in the urine. Therefore, high-dose vitamin A should be used only under the direction of a physician because of the need to monitor for harmful side effects such as hepatotoxicity. Of note, the studies by Berson et al [1993] were performed on individuals older than age 18 years because of the unknown effects of high-dose vitamin A on children.
Lutein supplements. Oral administration of lutein (20 mg/d) for six months had no effect on central vision; however, long-term effects are unknown [Aleman et al 2001].
Genetics clinics, staffed by genetics professionals, provide information for individuals and families regarding the natural history, treatment, mode of inheritance, and genetic risks to other family members as well as information about available consumer-oriented resources. See the GeneTests Clinic Directory.
Genetic Counseling
Genetic counseling is the process of providing individuals and families with information on the nature, inheritance, and implications of genetic disorders to help them make informed medical and personal decisions. The following section deals with genetic risk assessment and the use of family history and genetic testing to clarify genetic status for family members. This section is not meant to address all personal, cultural, or ethical issues that individuals may face or to substitute for consultation with a genetics professional. To find a genetics or prenatal diagnosis clinic, see the GeneTests Clinic Directory.
Mode of Inheritance
Usher syndrome type II (USH2) is inherited in an autosomal recessive manner.
Risk to Family Members
Parents of a proband
- The parents of an individual with USH2 are obligate heterozygotes and therefore carry a single copy of a disease-causing mutation in an USH2-related gene.
- Heterozygotes are asymptomatic.
Sibs of a proband
- At conception, each sib of an affected individual has a 25% chance of being affected, a 50% chance of being an asymptomatic carrier, and a 25% chance of being unaffected and not a carrier.
- Once an at-risk sib is known to be unaffected, the risk of his/her being a carrier is 2/3.
- Heterozygotes (carriers) are asymptomatic.
Offspring of a proband. The offspring of an affected individual are obligate heterozygotes.
Other family members of a proband. Each sib of the proband's parents is at a 50% risk of being a carrier.
Carrier Detection
Carrier testing is available on a clinical basis once the mutations in USH2A have been identified in the family.
Related Genetic Counseling Issues
See Management, Evaluation of Relatives at Risk for information on testing at-risk relatives for the purpose of early diagnosis and treatment.
Family planning
- The optimal time for determination of genetic risk, clarification of carrier status, and discussion of the availability of prenatal testing is before pregnancy.
- It is appropriate to offer genetic counseling (including discussion of potential risks to offspring and reproductive options) to young adults who are affected, are carriers, or are at risk of being carriers.
DNA banking is the storage of DNA (typically extracted from white blood cells) for possible future use. Because it is likely that testing methodology and our understanding of genes, mutations, and diseases will improve in the future, consideration should be given to banking DNA of affected individuals. See
for a list of laboratories offering DNA banking.
Prenatal Testing
Prenatal diagnosis for pregnancies at increased risk for Usher syndrome type 2A, 2C, and 2D is possible by analysis of DNA extracted from fetal cells obtained by amniocentesis usually performed at approximately 15 to 18 weeks' gestation or chorionic villus sampling (CVS) at approximately ten to 12 weeks' gestation. Both disease-causing alleles of an affected family member must be identified before prenatal testing can be performed.
Note: Gestational age is expressed as menstrual weeks calculated either from the first day of the last normal menstrual period or by ultrasound measurements.
Requests for prenatal testing for conditions such as Usher syndrome are not common. Differences in perspective may exist among medical professionals and within families regarding the use of prenatal testing, particularly if the testing is being considered for the purpose of pregnancy termination rather than early diagnosis. Although most centers would consider decisions about prenatal testing to be the choice of the parents, discussion of these issues is appropriate.
Preimplantation genetic diagnosis (PGD) may be available for families in which the disease-causing mutations have been identified. For laboratories offering PGD, see
.
Note: It is the policy of GeneReviews to include in GeneReviews™ chapters any clinical uses of testing available from laboratories listed in the GeneTests™ Laboratory Directory; inclusion does not necessarily reflect the endorsement of such uses by the author(s), editor(s), or reviewer(s).
Resources
GeneReviews staff has selected the following disease-specific and/or umbrella support organizations and/or registries for the benefit of individuals with this disorder and their families. GeneReviews is not responsible for the information provided by other organizations. For information on selection criteria, click here.
- Coalition for Usher Syndrome Researchc/o The Decibels Foundation1269 Main StreetConcord MA 01742Phone: 617-951-9542Email: m.dunning@lek.com
- National Library of Medicine Genetics Home Reference
- Alexander Graham Bell Association for the Deaf and Hard of Hearing3417 Volta Place NorthwestWashington DC 20007Phone: 866-337-5220 (toll-free); 202-337-5220; 202-337-5221 (TTY)Fax: 202-337-8314Email: info@agbell.org
- American Society for Deaf Children (ASDC)800 Florida Avenue Northeast#2047Washington DC 20002-3695Phone: 800-942-2732 (Toll-free Parent Hotline); 866-895-4206 (toll free voice/TTY)Fax: 410-795-0965Email: info@deafchildren.org; asdc@deafchildren.org
- Foundation Fighting Blindness11435 Cronhill DriveOwings Mills MD 21117-2220Phone: 800-683-5555 (toll-free); 800-683-5551 (toll-free TDD); 410-568-0150Email: info@fightblindness.org
- my baby's hearingThis site, developed with support from the National Institute on Deafness and Other Communication Disorders, provides information about newborn hearing screening and hearing loss.
- National Association of the Deaf (NAD)8630 Fenton StreetSuite 820Silver Spring MD 20910Phone: 301-587-1788; 301-587-1789 (TTY)Fax: 301-587-1791Email: nad.info@nad.org
- SENSE101 Pentonville RoadLondon N1 9LGUnited KingdomPhone: 0845 127 0060 (voice); 0845 127 0062 (textphone)Fax: 0845 127 0061Email: info@sense.org.uk
- Usher Syndrome RegistryCoalition for Usher Syndrome ResearchPhone: 617-951-9542Email: m.dunning@lek.com
Molecular Genetics
Information in the Molecular Genetics and OMIM tables may differ from that elsewhere in the GeneReview: tables may contain more recent information. —ED.
Table A. Usher Syndrome Type II: Genes and Databases
| Locus Name | Gene Symbol | Chromosomal Locus | Protein Name | Locus Specific | HGMD |
|---|---|---|---|---|---|
| USH2A | USH2A | 1q41 | Usherin | Deafness Gene Mutation Database Retina International Mutations of the USH2a Gene CCHMC - Human Genetics Mutation Database USH2A @ LOVD | USH2A |
| USH2C | GPR98 | 5q14 | G-protein coupled receptor 98 | GPR98 @ USHbases CCHMC - Human Genetics Mutation Database | GPR98 |
| USH2D | DFNB31 | 9q32 | Whirlin | WHRN @ USHbases CCHMC - Human Genetics Mutation Database | DFNB31 |
Table B. OMIM Entries for Usher Syndrome Type II (View All in OMIM)
Molecular Genetic Pathogenesis
The five known USH1 proteins and the three known USH2 proteins interact with one another; the first PDZ domain of harmonin plays a central role in this network. If any one of the molecules in this "interactome" is nonfunctional or absent, sensoneuronal degeneration occurs in the inner ear and the retina [Adato et al 2005, Reiners et al 2006, van Wijk et al 2006, Maerker et al 2008].
The protein encoded by GPR98 (VLGR1) belongs to a subgroup of the large N-terminal family B seven-transmembrane receptors, all of which have a G-protein-coupled proteolysis site. The proteins encoded by USH2A and GPR98 have quite similar pentraxin (PTX) homology domains, suggesting that they may share an affinity for a common binding partner. Also, the motif architecture of the protein encoded by VLGR1 is very like that of cadherins, two of which are encoded by genes associated with Usher type I (CDH23 and PCDH15). The very large extracellular portion of VLGR1b has 35 CalX-β modules, and the C-terminal residues correspond to the consensus motif for a PDZ-binding domain.
Note that a comprehensive set of databases (UMD-USHbases) providing information about mutations responsible for Usher syndrome is available [Baux et al 2008]. In addition, an Usher syndrome genotyping microarray based on the arrayed primer extension (APEX) method has been developed [Cremers et al 2007].
USH2A
Normal allelic variants. USH2A spans approximately 790 kb of genomic DNA and contains 72 exons [van Wijk et al 2004].
Pathologic allelic variants. Initially it was thought that most mutations were in the 21 exons originally described, with p.Glu767SerfsX21 being the most common (16%) [Eudy et al 1998, Adato et al 2000, Dreyer et al 2000, Weston et al 2000, Leroy et al 2001, Nájera et al 2002]. However, many mutations have now been reported in exons 22-72 [Baux et al 2007]. Four USH2A mutations account for 64% of mutant alleles underlying Usher syndrome type 2 in the non-Ashkenazi Jewish population [Auslender et al 2008].
Table 3. Selected USH2A Pathologic Allelic Variants
| DNA Nucleotide Change | Protein Amino Acid Change | Reference Sequences |
|---|---|---|
| c.2276G>T | p.Cys759Phe | NM_206933 NP_996816 |
| c.2299delG 1 | p.Glu767SerfsX21 | |
| c.14020A>G | p.Arg4674Gly |
See Quick Reference for an explanation of nomenclature. GeneReviews follows the standard naming conventions of the Human Genome Variation Society (www
.hgvs.org). 1. Associated with arRP (see Genetically Related Disorders)
Normal gene product. The 21 exons of USH2A originally described encode a protein of 1,546 amino acids. An additional 51 novel exons were subsequently identified, with the longest ORF extending from exon 2 to 72, and encoding a putative protein of 5,202 amino acids [van Wijk et al 2004]. Expression of both the short and long isoforms is highest in the adult retina, with the long form being the most predominant, and specifically localized to the photoreceptor cells. It is also found in developing cochlear hair cells, but disappears by about postnatal day 15 [Liu et al 2007].
The short isoform of usherin contains a secretion signal peptide, followed by four readily identifiable domains observed in extracellular matrix or cell adhesion proteins: a laminin G-like jellyroll fold, also found in thrombospondins and pentraxins (LamG/TSPN/PTX), laminin type VI (LN), ten laminin epidermal growth factor (LE), and four fibronectin type-III (FN3) repeats; the long isoform has an additional 28 FN3 repeats, as well as two laminin G (LamG) domains. It is predicted to have an outside-in transmembrane region followed by an intracellular domain that includes a PDZ-binding domain at its C-terminal end [van Wijk et al 2004]. Proteins with LamG/TSPN/PTX domains are involved in neuronal growth, patterning, and calcium-mediated ligand binding. The LN module of usherin has the most homology with the netrins, which are chemoattractant matrix molecules involved in nerve fiber guidance. Arrays of LE domains form rod-like tertiary structures that may provide a rigid spacer between two functional domains. FN domains in other proteins form beta-pleated sheets that bind heparin and integrin molecules. Usherin studies show colocalization with and binding to the extracellular basement membrane protein, type IV collagen, with a relatively broad tissue distribution [Bhattacharya et al 2002, Pearsall et al 2002, Bhattacharya et al 2004].
Abnormal protein product. See Molecular Genetic Pathogenesis.
GPR98 (VLGR1)
Normal allelic variants. GPR98 spans more than 600 kb of genomic DNA and contains 90 exons. It is expressed predominantly in the central nervous system during development.
Pathologic allelic variants. Weston et al [2004] identified four mutations in three families with Usher syndrome type 2C; all of the affected members in these families were female and none of the mutations involved the protein isoform VLGR1c. Several males with GPR98 mutations, including a large deletion in members of an Iranian family [Hilgert et al 2009], have now been reported [Ebermann et al 2009].
Normal gene product. VLGR1a has 1967 amino acids and is the smallest isoform; it is also much less abundant than VLGR1b.
The longest gene product (VLGR1b) has 6307 amino acids with a predicted molecular weight of 692 kd and is the largest known cell-surface receptor protein.
VLGR1c has 2296 amino acids and transcript expression levels approximately 1.5 times those of VLGR1b in most fetal tissues [McMillan et al 2002].
All three isoforms are expressed in fetal retina and cochlea.
Abnormal protein product. See Molecular Genetic Pathogenesis.
DFNB31
Normal allelic variants. DFNB31 contains 12 exons.
Pathologic allelic variants. Ebermann et al [2007] identified a nonsense mutation in exon 1 and an exon 2 splice donor site mutation in affected members of a German family with USH2. However, no evidence of causal DFNB31 mutations was found in a study of 195 individuals with Usher syndrome, suggesting that the percentage of people with Usher syndrome type 2D is small [Aller et al 2010].
Normal gene product. Whirlin has a similar structure to harmonin (the USH1C gene product) with up to three PDZ domains and a proline-rich domain. It has both a short and a long isoform, with only the long isoform being expressed in the retina. Whirlin interacts in vivo with Usherin and VLGR1, suggesting that these three proteins function as a multi-protein complex in both the stereocilia of the cochlear hair cells and the periciliary membrane complex of the retinal photoreceptor cells [Yang et al 2010].
Abnormal protein product. See Molecular Genetic Pathogenesis.
References
Medical Genetic Searches: A specialized PubMed search designed for clinicians that is located on the PubMed Clinical Queries page
Published Guidelines/Consensus Statements
- American College of Medical Genetics. Genetics evaluation guidelines for the etiologic diagnosis of congenital hearing loss. Genetic evaluation of congenital hearing loss expert panel. (pdf) Available at www
.acmg.net. 2002. Accessed 12-27-11. [PMC free article: PMC3110944] [PubMed: 12180152] - American College of Medical Genetics. Statement on universal newborn hearing screening. Available at genetics
.faseb.org. 2000. Accessed 12-29-11.
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Suggested Reading
- Cohen M, Bitner-Glindzicz M, Luxon L. The changing face of Usher sydrome: Clinical implications. Int J Audiol. 2007;46:82–93. [PubMed: 17365059]
Chapter Notes
Acknowledgments
Edward Cohn, MD, Department of Otolaryngology, Boys Town National Research Hospital
Janos Sumegi, PhD, Department of Pathology and Microbiology, University of Nebraska Medical Center, Omaha
Claes Möller, MD, PhD, Department of Otorhinolaryngology, Sahlgrenska University Hospital, Göteborg, Sweden
Research supported by FFB and NIH
Author History
Bronya Keats, PhD (2006-present)
William J Kimberling, PhD, FACMG; Boys Town National Research Hospital (1999-2006)
Jennifer Lentz, PhD (2006-present)
Dana J Orten, PhD; Boys Town National Research Hospital (2003-2006)
Sandra Pieke-Dahl, PhD; Ohio State University (1999-2003)
Michael D Weston, MA; Boys Town National Research Hospital (1999-2006)
Revision History
- 29 December 2011 (cd) Revision: deletion/duplication analysis available for GPR98 and DFNB31
- 23 December 2010 (me) Comprehensive update posted live
- 14 April 2009 (me) Comprehensive update posted live
- 5 November 2007 (cd) Revision: prenatal diagnosis for Usher syndrome type 2A available
- 14 November 2006 (me) Comprehensive update posted to live Web site
- 20 October 2004 (wk) Revision: sequencing of entire coding region available
- 13 January 2004 (wk) Revision: change in test availability
- 20 November 2003 (me) Comprehensive update posted to live Web site
- 10 December 1999 (me) Review posted to live Web site
- 19 February 1999 (wk) Original submission
- Usher Syndrome Type I[GeneReviews™. 1993]Keats BJBLentz J, . GeneReviews™. 1993
- Seven novel mutations in the long isoform of the USH2A gene in Chinese families with nonsyndromic retinitis pigmentosa and Usher syndrome Type II.[Mol Vis. 2011]Seven novel mutations in the long isoform of the USH2A gene in Chinese families with nonsyndromic retinitis pigmentosa and Usher syndrome Type II.Xu WDai H, Lu T, Zhang X, Dong B, Li Y, . Mol Vis. 2011; 17:1537-52. Epub 2011 Jun 9.
- An update on the genetics of usher syndrome.[J Ophthalmol. 2011]Millán JMAller E, Jaijo T, Blanco-Kelly F, Gimenez-Pardo A, Ayuso C, . J Ophthalmol. 2011; 2011:417217. Epub 2010 Dec 23.
- Review [Perform vestibular test among all small deaf children! Early detection of Usher syndrome improves the possibilities of communication in the event of later deaf-blindness].[Lakartidningen. 1998]Review [Perform vestibular test among all small deaf children! Early detection of Usher syndrome improves the possibilities of communication in the event of later deaf-blindness].Konrádsson KMagnusson M, Andréasson S, . Lakartidningen. 1998 Jan 28; 95(5):379-81.
- Review [From gene to disease; genetic causes of hearing loss and visual impairment sometimes accompanied by vestibular problems (Usher syndrome)].[Ned Tijdschr Geneeskd. 2002]Review [From gene to disease; genetic causes of hearing loss and visual impairment sometimes accompanied by vestibular problems (Usher syndrome)].Pennings RJKremer H, Deutman AF, Kimberling WJ, Cremers CW, . Ned Tijdschr Geneeskd. 2002 Dec 7; 146(49):2354-8.
- Usher Syndrome Type II - GeneReviews™Usher Syndrome Type II - GeneReviews™Bookself
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