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Calpainopathy

Limb-Girdle Muscular Dystrophy Type 2A, LGMD2A

Corrado Angelini, MD and Marina Fanin, PhD.

Author Information
Corrado Angelini, MD
Department of Neurosciences
University of Padova
corrado.angelini/at/unipd.it
Marina Fanin, PhD
Department of Neurosciences
University of Padova
marina.fanin/at/unipd.it

Initial Posting: May 10, 2005; Last Revision: July 8, 2010.

Summary

Disease characteristics. Calpainopathy is characterized by symmetric and progressive weakness of proximal (limb-girdle) muscles. The age at onset of muscle weakness ranges from two to 40 years. The phenotype shows intra- and interfamilial variability from mild to severe. Three calpainopathy phenotypes have been identified based on the distribution of muscle weakness and age at onset: pelvofemoral limb-girdle muscular dystrophies (LGMDs) (Leyden-Möbius) phenotype, the most frequently observed calpainopathy phenotype, in which muscle weakness is first evident in the pelvic girdle and later in the shoulder girdle with onset before age 12 years or after age 30 years; scapulo-humeral LGMD (Erb) phenotype, usually a milder phenotype with infrequent early onset, in which muscle weakness is first evident in the shoulder girdle and later in the pelvic girdle; and hyperCKemia, usually observed in children or young individuals, in which asymptomatic individuals have only high serum creatine kinase (CK) concentrations. Clinical findings include the tendency to walk on tiptoes, difficulty in running, scapular winging, waddling gait, and slight hyperlordosis. Other findings include symmetric weakness of proximal more than distal muscles in the limbs, trunk, and periscapular area; laxity of the abdominal muscles; Achilles tendon shortening; scoliosis; and joint contractures.

Diagnosis/testing. Serum CK concentration is elevated (5-80 times normal). Muscle biopsy in individuals with severe disease reveals an active dystrophic process. CAPN3, which encodes proteolytic enzyme calpain-3, is the only gene known to be associated with calpainopathy. Approximately 80% of individuals with a CAPN3 mutation show variable levels of calpain-3 protein deficiency. Although CAPN3 mutations are distributed throughout the length of the gene, most are clustered in a limited number of exons; mutation scanning of these regions detects approximately 90% of causative mutations. Sequence analysis of the entire coding region detects approximately 99% of mutations.

Management. Treatment of manifestations: physical therapy and stretching exercises to promote mobility and prevent contractures; aids such as canes, walkers, orthotics, and wheelchairs to help maintain independence; surgery for foot deformities, scoliosis, and Achilles tendon contractures as needed; respiratory aids to treat chronic respiratory insufficiency in late stages of the disease.

Surveillance: monitoring of muscle strength, joint range of motion, respiratory function, and orthopedic complications.

Agents/circumstances to avoid: strenuous and excessive muscle exercise; obesity and excessive weight loss; physical trauma, bone fractures, and immobility.

Genetic counseling. Calpainopathy is inherited in an autosomal recessive manner. At conception each sib of an affected individual has a 25% chance of being affected, a 50% chance of being an asymptomatic carrier, and a 25% chance of being unaffected and not a carrier. Once an at-risk sib is known to be unaffected, the risk of his/her being a carrier is 2/3. Carrier testing for at-risk relatives and prenatal testing is available for pregnancies at increased risk are possible if the disease-causing mutations in the family are known.

Diagnosis

Clinical Diagnosis

Calpainopathy (also known as limb-girdle muscular dystrophy 2A [LGMD2A]) is suspected in individuals with the following:

  • Proximal muscle weakness (pelvic and/or shoulder girdle) with early onset (before age 12 years), adult onset, or late onset (after age 30 years)

  • Atrophy of limb and trunk muscles; possible calf hypertrophy

  • Scapular winging, scoliosis, Achilles tendon contracture, and other joint contractures (including hip, knee, elbow, finger, and spine)

  • Waddling gait; tip-toe walking; difficulty in running, climbing stairs, lifting weights, and getting up from the floor or from a chair

  • Sparing of facial, ocular, tongue, and neck muscles

  • Absence of cardiomyopathy and intellectual disability

  • Family history consistent with autosomal recessive inheritance

Testing

Serum creatine kinase (CK) concentration is elevated (5-80 times normal) from early infancy on, particularly during the active stage of the disease. Serum CK concentration decreases with disease progression.

Muscle CT scan or MRI

  • Wasting of muscles predominantly from the posterior compartment of the limbs, evident on clinical examination, is observed by muscle CT scan [Fardeau et al 1996]. The difference in distribution of muscle involvement between calpainopathy and other limb-girdle muscular dystrophies (LGMDs) (i.e., sarcoglycanopathies and dysferlinopathies) makes CT scan analysis an important element in clinical diagnosis (see Differential Diagnosis).

  • MRI scan confirms this selective involvement [Mercuri et al 2005].

Electromyogram (EMG) pattern is typically myopathic (showing small polyphasic potentials), although a normal EMG can also be observed in presymptomatic individuals. Myotonia and spontaneous discharges are not present.

Muscle biopsy

  • Histopathology. A variety of morphologic changes and variable muscle involvement may be observed, irrespective of the age of the individual at the time of biopsy. Most individuals have the typical features of an active dystrophic process (increased fiber size variability, increased fibrosis, regenerating fibers, degenerating and necrotic fibers); others have mild and nonspecific myopathic features (increased central nuclei, fiber splitting, lobulated fibers, type 1 fiber predominance). Wide variability can be observed among individuals who are homozygous for the same missense mutation [Chae et al 2001, Fanin et al 2003].

  • Calpain-3 immunohistochemical analysis. Absent immunohistochemical reaction was reported in muscle from patients in whom the absent protein had previously been detected by immunoblotting [Kolski et al 2008, Charlton et al 2009]. This method appears however less sensitive than immunoblotting in detecting partial protein reduction.

  • Calpain-3 immunoblot analysis of muscle biopsy is the most useful diagnostic tool in calpainopathy. Approximately 80% of individuals with a CAPN3 mutation show variable levels of calpain-3 protein deficiency (approximately 58% of affected individuals have no detectable calpain-3 protein; 22% have partial reduction of the amount of protein) and 20% have a normal amount of protein (but with loss of protein function) [Groen et al 2007].

    Note: The results of calpain-3 immunoblot analysis need to be interpreted with caution, as the analysis is neither completely sensitive (i.e., it can yield false negative results) nor completely specific (i.e., it can yield false positive results). In particular, calpain-3 protein levels can be partially reduced in other muscular dystrophies such as dysferlinopathy and Udd muscular dystrophy (titinopathy) [Anderson et al 2000, Fanin et al 2001, Haravuori et al 2001]. Moreover, although calpain-3 protein is extremely stable in human muscle over time [Anderson et al 1998], the amount of protein can be partially reduced by the degradation that occurs when muscle tissue is handled or stored under conditions that promote rapid calpain-3 autolysis (especially partial thawing and exposure to moisture) [Anderson et al 1998, Fanin et al 2003].

  • Assay of calpain-3 autolytic function in muscle (available only on a research basis) is better than conventional immunoblot analysis in identifying those affected individuals in whom CAPN3 mutations affect the autolytic function of calpain-3 protein rather than the quantity of calpain-3 protein [Fanin et al 2007].

Molecular Genetic Testing

Gene. CAPN3, which encodes proteolytic enzyme calpain-3, is the only gene known to be associated with calpainopathy.

Clinical testing

Intronic nucleotide changes. The analysis of mutations at mRNA level (from muscle or blood) may be more efficient than exon-by-exon DNA screening and [Richard & Beckmann 1995] detect functional consequences of variants detected in non-coding regions and deep-intronic mutations [Blazquez et al 2008].

Table 1. Summary of Molecular Genetic Testing Used in Calpainopathy

Gene SymbolTest MethodMutations DetectedMutation Detection Frequency by Test Method 1Test Availability
CAPN3Mutation scanningSequence variants90% 2 Clinical
Image testing.jpg
Sequence analysisSequence variants~99%
Deletion/duplication analysis 3Partial- and whole-gene deletions/duplicationsUnknown

Test Availability refers to availability in the GeneTests Laboratory Directory. GeneReviews designates a molecular genetic test as clinically available only if the test is listed in the GeneTests Laboratory Directory by either a US CLIA-licensed laboratory or a non-US clinical laboratory. GeneTests does not verify laboratory-submitted information or warrant any aspect of a laboratory's licensure or performance. Clinicians must communicate directly with the laboratories to verify information.

1. The ability of the test method used to detect a mutation that is present in the indicated gene

2. Detection frequency varies by exons scanned, ethnicity of the individual being tested, scanning method used, and laboratory Sequence analysis and mutation scanning of the entire gene can have high detection frequencies, although mutation scanning detection rates may vary considerably among testing laboratories as that method is highly dependent on details of the methodology employed.

3. Testing that identifies deletions/duplications not readily detectable by sequence analysis of genomic DNA; a variety of methods including quantitative PCR, long-range PCR, multiplex ligation-dependent probe amplification (MLPA), or targeted array GH (gene/segment-specific) may be used. A full array GH analysis that detects deletions/duplications across the genome may also include this gene/segment. See array GH.

Interpretation of test results. For issues to consider in interpretation of sequence analysis results, click here.

Testing Strategy

Testing strategy used in the diagnosis of calpainopathy in a proband differs depending on the availability of diagnostic muscle biopsy.

  • Individuals for whom muscle biopsy is available. Diagnostic muscle biopsy allows screening by western blot of multiple proteins that are responsible for different forms of LGMD. After exclusion of other protein defects (i.e., sarcoglycans, dystrophin, dysferlin, caveolin), calpain-3 protein immunoblot remains the most useful strategy in the diagnosis of calpainopathy [Pollitt et al 2001].

    The subsequent steps, aimed at identifying gene mutations, vary according to the findings obtained from protein analysis.

    • In individuals with immunoblot-confirmed calpain-3 deficiency, the detection rate for one or two pathogenic CAPN3 mutations is approximately 84%. If two mutant alleles are identified, the genetic diagnosis is confirmed.

    • In individuals with immunoblot-confirmed calpain-3 protein deficiency and no identified CAPN3 mutations, genetic diagnosis of calpainopathy can neither be established nor excluded.

    • In individuals with normal amounts of calpain-3 protein on immunoblot analysis of muscle biopsy tissue, the diagnosis of calpainopathy appears unlikely but cannot be excluded because of possible functional enzyme defects. Such individuals have a residual risk of calpainopathy of approximately 9%. In these individuals, sequencing CAPN3 can be pursued but the yield will be low.

  • Individuals for whom muscle biopsy is unavailable. Sequence analysis of CAPN3 is the optimal diagnostic step in these individuals because mutation scanning of CAPN3 is expected to identify a mutation in fewer than 40% of individuals with LGMD (of which LGMD2A is the most common form), in non-consanguineous populations [Kawai et al 1998, Chou et al 1999, Zatz et al 2000, Bushby & Beckmann 2003].

Carrier testing for at-risk relatives requires prior identification of the disease-causing mutations in the family.

Note: Carriers are heterozygotes and are not at risk of developing the disorder.

Prenatal diagnosis for at-risk pregnancies requires prior identification of the disease-causing mutations in the family.

Note: It is the policy of GeneReviews to include clinical uses of testing available from laboratories listed in the GeneTests Laboratory Directory; inclusion does not necessarily reflect the endorsement of such uses by the author(s), editor(s), or reviewer(s).

Clinical Description

Natural History

Calpainopathy is characterized by symmetric and progressive weakness of proximal (limb-girdle) muscles. The age at onset of muscle weakness ranges from two to 40 years. Early motor milestones are usually normal. Intra- and interfamilial clinical variability ranges from severe to mild [Richard et al 1999].

Three calpainopathy phenotypes have been identified based on the distribution of muscle weakness and age at onset:

  • Pelvofemoral LGMD (Leyden-Möbius) phenotype, the most frequently observed calpainopathy phenotype Muscle weakness is first evident in the pelvic girdle and later in the shoulder girdle. Onset can be early (age <12 years), adult, or late (age >30 years). Individuals with early onset and rapid disease course usually have pelvofemoral LGMD.

  • Scapulohumeral LGMD (Erb) phenotype. Muscle weakness is first evident in the shoulder girdle and later in the pelvic girdle. Early onset is infrequent; the disease course is variable, but usually milder than that in the pelvofemoral phenotype.

  • HyperCKemia. Asymptomatic individuals have high serum CK concentrations only. HyperCKemia may be considered a presymptomatic stage of calpainopathy, as it is usually observed in children or young individuals.

The first clinical findings of calpainopathy are usually the tendency to walk on tiptoes, difficulty in running, and scapular winging. Waddling gait and slight hyperlordosis are frequently observed in the early stage of the disease. Symmetric weakness of proximal more than distal muscles is evident in the limbs, trunk, and periscapular area. Marked laxity of the abdominal muscles is frequently seen [Bushby 1999, Pollitt et al 2001]. The gluteus maximus, thigh adductors, and posterior compartment of the limbs are most affected [Fardeau et al 1996, Dincer et al 1997, Topaloglu et al 1997, Urtasun et al 1998]. Early Achilles tendon shortening and scoliosis may be present.

Some individuals report muscle pain and exercise intolerance [Penisson-Besnier et al 1998]. In some individuals, eosinophilic myositis was also found [Krahn et al 2006b]. Calf hypertrophy is rarely observed, and in a number of cases, significant atrophy is observed. Facial and neck muscles are usually spared. Macroglossia has not been described.

In the advanced stage of the disease, the inability to climb stairs, to rise up from a chair, or to get up from the floor is common. Joint contractures (in the hips, knees, elbows, and fingers) are common; rigid spine is occasionally observed on occasion [Pollitt et al 2001]. Respiratory insufficiency with reduced lung vital capacity may be present. Cardiomyopathy is uncommon. Intelligence is normal.

The disease is invariably progressive and loss of ambulation occurs approximately ten to 30 years after the onset of symptoms (between ages 10 and 48 years) [Richard et al 1999, Zatz et al 2003, Saenz et al 2005].

Genotype-Phenotype Correlations

Genotype-phenotype correlation in calpainopathy is complex and often complicated by the fact that most individuals are compound heterozygotes for CAPN3 mutations.

Null homozygous mutations are generally associated with a severe phenotype.

Although it has been suggested that homozygous missense mutations are usually associated with a milder phenotype than null mutations [Fardeau et al 1996, Anderson et al 1998, Richard et al 1999, Chae et al 2001], the phenotypic consequences of homozygous missense mutations are more difficult to predict [Richard et al 1997, Bushby 1999, De Paula et al 2002]. Wide clinical variability has been described among individuals homozygous for the same missense mutation, even among individuals within the same family [Fardeau et al 1996, Kawai et al 1998, Penisson-Besnier et al 1998, Richard et al 1999].

No direct correlations have been observed between the severity of the phenotype and the amount of calpain-3 protein detected by calpain-3 immunoblot analysis [Anderson et al 1998, Zatz et al 2003]. Affected individuals with either no detectable protein or normal amounts of protein have varying severity of the clinical phenotype [De Paula et al 2002, Fanin et al 2004]. Whereas null mutations are usually associated with a lack of detectable protein, missense mutations have variable and unpredictable consequences, which depend at least partially on the quantity of protein.

Penetrance

Nearly full penetrance is observed in adulthood. Some individuals remain asymptomatic until adulthood. Serum CK concentration is always increased.

Anticipation

Anticipation has not been described.

Nomenclature

Calpainopathy was formerly called LGMD2A because it was the first form of autosomal recessive LGMD to be mapped [Beckmann et al 1991].

Prevalence

Calpainopathy is considered the most common form of LGMD [Bushby & Beckmann 2003], representing approximately 30% of LGMD cases, depending on the geographic region [Chou et al 1999, Zatz et al 2000]. Estimates based on molecular data indicate that the frequency ranges from 10% of LGMD cases in a Caucasian population from the US [Chou et al 1999, Moore et al 2006] to 21% in the Netherlands [van der Kooi et al 2007], 25-28% in Italy [Guglieri et al 2008, Fanin et al 2009], 26% in Japan [Kawai et al 1998], 50% in Turkey [Dincer et al 1997], and 80% in the Basque country [Urtasun et al 1998] and Russia [Pogoda et al 2000]. In the latter countries and in inbred populations (La Reunion Island and the Old Order Amish community in North America), the disease can be ten times more common.

A founder effect for the 550delA mutation has been reported in Croatia [Milic & Canki-Klain 2005] and in Russia [Pogoda et al 2000].

A genetic epidemiologic study in northeastern Italy estimated that calpainopathy has a prevalence of approximately 1:100,000 inhabitants (corresponding to a carrier frequency of ~1:160) [Fanin et al 2005].

Differential Diagnosis

For current information on availability of genetic testing for disorders included in this section, see GeneTests Laboratory Directory. —ED.

Other forms of autosomal recessive limb-girdle muscular dystrophy (LGMD2). Other forms of LGMD2 (i.e., LGMD2B - LGMD2L) cannot be distinguished from calpainopathy on clinical grounds, although calpainopathy generally has a later onset and is relatively mild, particularly by comparison with sarcoglycanopathies. Immunoblot analysis of muscle biopsy for candidate proteins (sarcoglycans, dysferlin, telethonin, titin) can help establish the correct diagnosis. (See Limb-Girdle Muscular Dystrophy Overview.)

Facioscapulohumeral muscular dystrophy (FSHD). Erb muscular dystrophy (one of the calpainopathy phenotypes) shares some clinical and laboratory features with FSHD: muscle weakness with onset in the shoulder girdle, scapular winging, elevated serum CK concentration, and nonspecific myopathic changes on muscle biopsy. Facial muscle weakness and asymmetric muscle involvement, which can be observed in FSHD, are uncommon in calpainopathy. Inheritance is autosomal dominant.

Becker muscular dystrophy (BMD). The diagnosis of BMD should be considered in males who have onset of weakness in the lower girdle muscles in adolescence or adulthood and elevated serum CK concentrations and: (1) an X-linked recessive pattern of inheritance (sometimes only resulting in elevated serum CK concentration in the proband's mother); or (2) no family history of muscle disease; or (3) heart involvement (mainly dilated cardiomyopathy). Diagnosis can be established by dystrophin immunoblot analysis on muscle biopsy or molecular genetic testing of the DMD gene. (See Dystrophinopathies.)

Metabolic myopathy. Calpainopathy has been reported in individuals with asthenia, myalgias, exercise intolerance, lower limb proximal muscle weakness, and excessive lactate production after aerobic exercise [Penisson-Besnier et al 1998]. Such individuals may be difficult to diagnose.

Myopathy with contractures. The phenotype of calpainopathy may include muscle weakness with severe tendon contractures [Pollitt et al 2001], raising the possibility of Emery-Dreifuss muscular dystrophy.

Note to clinicians: For a patient-specific ‘simultaneous consult’ related to this disorder, go to Image SimulConsult.jpg, an interactive diagnostic decision support software tool that provides differential diagnoses based on patient findings (registration or institutional access required).

Management

Evaluations Following Initial Diagnosis

To establish the extent of disease in an individual diagnosed with calpainopathy, a complete physical evaluation including the grading of muscle strength in single muscles and the analysis of several functional performances is recommended.

Treatment of Manifestations

Appropriate management, tailored to each individual, can improve quality of life and prolong survival. The general approach is based on the typical progression and complications of individuals with LGMD as described by McDonald et al [1995] and Bushby [1999].

  • Physical therapy and stretching exercises can promote mobility and slow the disease progression, in particular by maintaining joint flexibility.

  • Technical aids can also compensate for the loss of certain motor abilities; canes, walkers, orthotics, and wheelchairs enable individuals to regain independence.

  • Surgical intervention may be required for correction of orthopedic complications including foot deformities, scoliosis, and Achilles tendon contractures.

  • In the late stage of the disease, chronic respiratory insufficiency may occur and the use of respiratory aids may be indicated to prolong survival.

  • Social and emotional support help to maximize a sense of social involvement and productivity and to reduce the sense of social isolation [Eggers & Zatz 1998].

Prevention of Secondary Manifestations

Physical therapy and stretching exercises can prevent contractures and muscle atrophy and thus help to slow disease progression.

Surveillance

Annual monitoring of muscle strength, joint range of motion, and respiratory function is recommended.

Monitoring for orthopedic complications, such as foot deformities, scoliosis, and Achilles tendon contractures, is recommended.

Agents/Circumstances to Avoid

Strenuous and eccentric muscle exercises should be discouraged as it exacerbates muscle necrosis and could precipitate the onset of weakness or accelerate muscle wasting.

Body weight should be controlled to avoid obesity and excessive weight loss (atrophy of muscles can be accelerated by loss of muscle proteins).

Physical trauma, bone fractures, and immobility can induce disuse atrophy and thus should be avoided.

Although no association of the disease with malignant hyperthermia is reported, the use of succinylcholine and halogenated anesthetic agents should be avoided when possible. (See Malignant Hyperthermia Susceptibility.)

While the specific mechanism whereby cholesterol-lowering agents (e.g., statins) may produce muscle lesions is unknown, such drugs should be avoided when possible.

Testing of Relatives at Risk

Relatives at risk (e.g., sibs of probands) should be clinically examined, especially if they may be affected. Molecular genetic testing can be offered to at-risk relatives when clinical findings suggest calpainopathy and the disease-causing mutations in the family are known.

See Genetic Counseling for issues related to testing of at-risk relatives for genetic counseling purposes.

Therapies Under Investigation

The safety and efficacy of AAV-mediated calpain-3 gene transfer in a mouse model of LGMD2A has been reported [Bartoli et al 2006].

Search ClinicalTrials.gov for access to information on clinical studies for a wide range of diseases and conditions.

Other

Genetics clinics, staffed by genetics professionals, provide information for individuals and families regarding the natural history, treatment, mode of inheritance, and genetic risks to other family members as well as information about available consumer-oriented resources. See the GeneTests Clinic Directory.

See Consumer Resources for disease-specific and/or umbrella support organizations for this disorder. These organizations have been established for individuals and families to provide information, support, and contact with other affected individuals.

Genetic Counseling

Genetic counseling is the process of providing individuals and families with information on the nature, inheritance, and implications of genetic disorders to help them make informed medical and personal decisions. The following section deals with genetic risk assessment and the use of family history and genetic testing to clarify genetic status for family members. This section is not meant to address all personal, cultural, or ethical issues that individuals may face or to substitute for consultation with a genetics professional. To find a genetics or prenatal diagnosis clinic, see the GeneTests Clinic Directory.

Mode of Inheritance

Calpainopathy is inherited in an autosomal recessive manner.

Risk to Family Members

Parents of a proband

  • The parents of an affected individual are obligate heterozygotes and therefore carry one mutant allele.

  • Heterozygotes (carriers) are asymptomatic.

Sibs of a proband

  • At conception, each sib of an affected individual has a 25% chance of being affected, a 50% chance of being an asymptomatic carrier, and a 25% chance of being unaffected and not a carrier.

  • Once an at-risk sib is known to be unaffected, the risk of his/her being a carrier is 2/3.

  • Heterozygotes (carriers) are asymptomatic.

Offspring of a proband

  • The offspring of an affected individual are obligate heterozygotes (carriers) for a disease-causing mutation in CAPN3.

  • In populations with a high rate of consanguinity, the reproductive partner of an affected individual may be a carrier, in which case the risk to the offspring of being affected is 50%.

Other family members of a proband. Each sib of the proband's parents is at a 50% risk of being a carrier.

Carrier Detection

Carrier testing for at-risk family members is available on a clinical basis once the mutations have been identified in the family.

Carrier testing for the reproductive partners of affected individuals and known carriers is available on a clinical basis and is generally done by sequence analysis of the exons in which mutations are most commonly found.

Related Genetic Counseling Issues

Family planning. The optimal time for determination of genetic risk, clarification of carrier status, and discussion of the availability of prenatal testing is before pregnancy. It is appropriate to offer genetic counseling (including discussion of potential risks to offspring and reproductive options) to young adults who are affected or at risk of being carriers.

DNA banking is the storage of DNA (typically extracted from white blood cells) for possible future use. Because it is likely that testing methodology and our understanding of genes, mutations, and diseases will improve in the future, consideration should be given to banking DNA of affected individuals. See Image testing.jpg for a list of laboratories offering DNA banking.

Prenatal Testing

Prenatal diagnosis for pregnancies at increased risk is possible by analysis of DNA extracted from fetal cells obtained by amniocentesis usually performed at approximately 15-18 weeks' gestation or chorionic villus sampling (CVS) at approximately ten to 12 weeks' gestation. Both disease-causing alleles of an affected family member must be identified before prenatal testing can be performed.

Note: Gestational age is expressed as menstrual weeks calculated either from the first day of the last normal menstrual period or by ultrasound measurements.

Preimplantation genetic diagnosis (PGD) may be available for families in which the disease-causing mutations have been identified. For laboratories offering PGD, see Image testing.jpg.

Note: It is the policy of GeneReviews to include clinical uses of testing available from laboratories listed in the GeneTests Laboratory Directory; inclusion does not necessarily reflect the endorsement of such uses by the author(s), editor(s), or reviewer(s).

Molecular Genetics

Information in the Molecular Genetics and OMIM tables may differ from that elsewhere in the GeneReview: tables may contain more recent information. —ED.

Table A. Calpainopathy: Genes and Databases

Locus NameGene SymbolChromosomal LocusProtein NameLocus SpecificHGMD
LGMD2ACAPN315q15​.1Calpain-3Leiden Muscular Dystrophy pages (CAPN3)CAPN3

Data are compiled from the following standard references: gene symbol from HGNC; chromosomal locus, locus name, critical region, complementation group from OMIM; protein name from UniProt. For a description of databases (Locus Specific, HGMD) to which links are provided, click here.

Table B. OMIM Entries for Calpainopathy (View All in OMIM)

114240CALPAIN 3; CAPN3
253600MUSCULAR DYSTROPHY, LIMB-GIRDLE, TYPE 2A; LGMD2A

Normal allelic variants. CAPN3 comprises 24 exons and covers a genomic region of 50 kb. It is expressed as a 3.5-kb transcript (2466 coding nucleotides) in an open reading frame predicted to encode a 94-kd translated protein of 821 amino acids called calpain-3. CAPN3 encodes a number of alternatively spliced transcripts [Herasse et al 1999].

Pathologic allelic variants. More than 300 disease-causing mutations have been reported, most of which are private mutations. They are distributed throughout the CAPN3 gene, although a few exons are more frequently involved [Anderson et al 1998, De Paula et al 2002, Zatz et al 2003, Fanin et al 2004] (see Molecular Genetic Testing).

Most mutations are single-nucleotide changes. Approximately 70% of mutant alleles have missense mutations; the remaining are a variety of null mutations (small deletions or insertions causing frameshift and premature stop codon, nonsense, and splice site mutations) [Richard et al 1999]. Large genomic mutations [Todorova et al 2007, Richard et al 1999], synonymous codon mutations [Richard & Beckmann 1995] and intronic mutations causing aberrant splicing are further causes of calpainopathy.

Many mutations have been observed repeatedly in different populations; the c.550delA mutation is the most common allele among Caucasian individuals from different European countries [Richard et al 1999].

Single mutations recur in the following populations in which a founder effect is the most likely explanation:

For more information, see Table A.

Table 2. Selected CAPN3 Pathologic Allelic Variants

DNA Nucleotide Change
(Alias 1)
Protein Amino Acid ChangeReference Sequence
c.550delA p.Thr184ArgfsX33NM_000070​.2
c.946-1G>A
(IVS6-1G>A)
--
c.2306G>A p.Arg769Gln
c.1795_1796insA p.Thr599AsnfsX30
c.2362_2363delAGinsTCATCT
(2362AG>TCATCT)
p.Arg788SerfsX13

See Quick Reference for an explanation of nomenclature. GeneReviews follows the standard naming conventions of the Human Genome Variation Society (www​.hgvs.org).

1. Variant designation that does not conform to current naming conventions

Normal gene product. Calpain-3 is an enzymatic protein of approximately 94 kd molecular weight (also called p94). It is the muscle-specific member of a family of Ca++-activated neutral proteases, which cleave proteins into short polypeptides. Calpain-3 is a multidomain protein with three exclusive sequence inserts (NS, IS1, IS2); domain I has a regulatory role, domain II is the proteolytic module, domain III has a C2-like domain, and domain IV binds Ca++ ions [Ono et al 1998]. Calpain-3 is expressed predominantly in skeletal muscle, where it is localized either in the nucleus or in the cytoplasm (where it binds to the protein titin) [Keira et al 2003]. Although the physiologic role of calpain-3 is still under investigation, it is thought to process proteins involved in signaling pathways, transcription factors, and cytoskeletal proteins as part of a process called sarcomere remodeling [Baghdiguian et al 1999, Baghdiguian et al 2001, Kramerova et al 2005, Duguez et al 2006, Kramerova et al 2007].

Abnormal gene product. CAPN3 gene mutations have a loss-of-function effect on translated protein. Most individuals with calpainopathy have complete or partial calpain-3 protein deficiency on muscle biopsy as a result of premature truncating mutations or increased protein instability (when caused by missense mutations). In 10% to 20% of individuals, muscle biopsies have a normal amount of protein [Talim et al 2001, De Paula et al 2002, Fanin et al 2004; Groen et al 2007], even though calpain-3 may have lost its autocatalytic activity and may be functionally inactive [Fanin et al 2003, Fanin et al 2007].

Resources

See Consumer Resources for disease-specific and/or umbrella support organizations for this disorder. These organizations have been established for individuals and families to provide information, support, and contact with other affected individuals. GeneTests provides information about selected organizations and resources for the benefit of the reader; GeneTests is not responsible for information provided by other organizations.—ED.

References

Medical Genetic Searches: A specialized PubMed search designed for clinicians that is located on the PubMed Clinical Queries page Image PubMed.jpg

Literature Cited

  1. Anderson LV, Davison K, Moss JA, Richard I, Fardeau M, Tome FM, Hubner C, Lasa A, Colomer J, Beckmann JS. Characterization of monoclonal antibodies to calpain 3 and protein expression in muscle from patients with limb-girdle muscular dystrophy type 2A. Am J Pathol. 1998;153:1169–79. [PMC free article: PMC1853046] [PubMed: 9777948]
  2. Anderson LV, Harrison RM, Pogue R, Vafiadaki E, Pollitt C, Davison K, Moss JA, Keers S, Pyle A, Shaw PJ, Mahjneh I, Argov Z, Greenberg CR, Wrogemann K, Bertorini T, Goebel HH, Beckmann JS, Bashir R, Bushby KM. Secondary reduction in calpain 3 expression in patients with limb girdle muscular dystrophy type 2B and Miyoshi myopathy (primary dysferlinopathies). Neuromuscul Disord. 2000;10:553–9. [PubMed: 11053681]
  3. Baghdiguian S, Martin M, Richard I, Pons F, Astier C, Bourg N, Hay RT, Chemaly R, Halaby G, Loiselet J, Anderson LV, Lopez de Munain A, Fardeau M, Mangeat P, Beckmann JS, Lefranc G. Calpain 3 deficiency is associated with myonuclear apoptosis and profound perturbation of the IkappaB alpha/NF-kappaB pathway in limb-girdle muscular dystrophy type 2A. Nat Med. 1999;5:503–11. [PubMed: 10229226]
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Suggested Reading

  1. Kang PB, Kunkel LM. The muscular dystrophies. In: Scriver CR, Beaudet AL, Sly WS, Valle D, Vogelstein B (eds) The Metabolic and Molecular Bases of Inherited Disease (OMMBID), McGraw-Hill, New York, Chap 216. Available at www.ommbid.com. Accessed 7-6-10.

Chapter Notes

Revision History

  • 8 July 2010 (cd) Revision: deletion/duplication analysis available clinically

  • 3 December 2007 (me) Comprehensive update posted to live Web site

  • 15 December 2005 (ca) Revision: prenatal diagnosis available

  • 10 May 2005 (me) Review posted to live Web site

  • 29 November 2004 (ca) Original submission

Copyright © 1993-2012, University of Washington, Seattle. All rights reserved.

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GeneReviews™ [Internet].
Pagon RA, Bird TD, Dolan CR, et al., editors.
Seattle (WA): University of Washington, Seattle; 1993-.

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