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Disease characteristics. The urea cycle disorders (UCD) result from defects in the metabolism of waste nitrogen from the breakdown of protein and other nitrogen-containing molecules. Severe deficiency or total absence of activity of any of the first four enzymes (CPS1, OTC, ASS, ASL) in the urea cycle or the cofactor producer (NAGS) results in the accumulation of ammonia and other precursor metabolites during the first few days of life. Infants with a severe urea cycle disorder are normal at birth but rapidly develop cerebral edema and the related signs of lethargy, anorexia, hyper- or hypoventilation, hypothermia, seizures, neurologic posturing, and coma. In milder (or partial) deficiencies of these enzymes and in arginase (ARG) deficiency, ammonia accumulation may be triggered by illness or stress at almost any time of life. In these disorders the elevations of plasma ammonia concentration and symptoms are often subtle and the first recognized clinical episode may not occur for months or decades.
Diagnosis/testing. The diagnosis of a urea cycle disorder is based on clinical suspicion and biochemical and molecular genetic testing. A plasma ammonia concentration of 150 μmol/L or higher associated with a normal anion gap and a normal plasma glucose concentration is an indication for the presence of a UCD. Plasma quantitative amino acid analysis and measurement of urinary orotic acid can distinguish between the specific UCDs. A definitive diagnosis of a urea cycle defect depends on either molecular genetic testing or measurement of enzyme activity. Molecular genetic testing is possible for all urea cycle defects.
Genetic counseling. Deficiencies of CPS1, ASS1, ASL, NAGS, and ARG are inherited in an autosomal recessive manner. OTC deficiency is inherited in an X-linked manner. Carrier testing for at-risk relatives and prenatal testing for pregnancies at increased risk using molecular genetic testing is possible for any of the urea cycle disorders if the disease-causing mutation(s) in the family are known.
Management. Treatment of manifestations: Acute severe hyperammonemia: Dialysis and hemofiltration to reduce plasma ammonia concentration; intravenous administration of arginine hydrochloride and nitrogen scavenger drugs to allow alternative pathway excretion of excess nitrogen; restriction of protein for 12 to 24 hours to reduce the amount of nitrogen in the diet; calories given as carbohydrates and fat; and physiologic stabilization with intravenous fluids and cardiac pressors while avoiding overhydration.
Prevention of primary manifestations: Long-term management: prevention of catabolism to avoid hyperammonemic episodes by dietary restriction of protein, use of specialized formulas, and use of oral nitrogen-scavenging drugs.
Prevention of secondary complications: Minimize risk of respiratory and gastrointestinal illnesses; routine immunizations; multivitamin and fluoride supplementation; appropriate use of antipyretics.
Surveillance: Routine monitoring by a physician experienced in the treatment of metabolic disorders.
Agents/circumstances to avoid: Valproic acid (Depakote); prolonged fasting or starvation; intravenous steroids; large boluses of protein or amino acids.
Evaluation of relatives at risk: Identification of affected at-risk relatives before symptoms occur allows dietary therapy and other measures to prevent hyperammonemia.
The urea cycle:
The urea cycle comprises the following (Figure 1) [Krebs & Henseleit 1932]:

Figure 1. The urea cycle (see Differential Diagnosis)
Urea cycle disorders (UCD) result from inherited deficiencies in the six enzymes of the urea cycle pathway (CPS1, OTC, ASS1, ASL, ARG, and NAGS).
NAGS deficiency. Deficiency of this enzyme has been described in a number of affected individuals. Symptoms mimic those of CPS1 deficiency, as CPS1 is rendered inactive in the absence of NAGS [Caldovic et al 2003].
Carbamoylphosphate synthetase I deficiency (CPS1 deficiency) is the most severe of the urea cycle disorders. Individuals with complete CPS1 deficiency rapidly develop hyperammonemia in the newborn period. Children who are successfully rescued from crisis are chronically at risk for repeated bouts of hyperammonemia.
Ornithine transcarbamylase deficiency (OTC deficiency). Absence of OTC activity in males is as severe as CPS1 deficiency. Approximately 15% of carrier females develop hyperammonemia during their lifetime and many require chronic medical management for hyperammonemia. More recently it has been recognized that carrier females who have never had symptoms of overt hyperammonemia have deficiencies in executive function.
Citrullinemia type I (ASS1 deficiency). The hyperammonemia in this disorder can also be quite severe. Affected individuals are able to incorporate some waste nitrogen into urea cycle intermediates, which makes treatment slightly easier than in the other UCDs.
Argininosuccinic aciduria (ASL deficiency) can also present with rapid-onset hyperammonemia in the newborn period. This enzyme defect is past the point in the metabolic pathway at which all the waste nitrogen has been incorporated into the cycle. Some patients develop chronic hepatic enlargement and elevation of transaminases. Biopsy of the liver shows enlarged hepatocytes, which may over time progress to fibrosis, the etiology of which is unclear. Affected individuals can also develop trichorrhexis nodosa, a node-like appearance of fragile hair that usually responds to arginine supplementation [Summar 2001, Summar & Tuchman 2001]. Affected individuals who have never had prolonged coma nevertheless have been reported to have significant developmental disabilities.
Arginase deficiency (hyperargininemia; ARG deficiency) is not typically characterized by rapid-onset hyperammonemia. Affected individuals develop progressive spasticity and can also develop tremor, ataxia, and choreoathetosis. Growth is affected [Cederbaum et al 2004].
Severity of the urea cycle defect is influenced by the position of the defective enzyme in the pathway and the severity of the enzyme defect.
Severe deficiency or total absence of activity of any of the first four enzymes in the pathway (CPS1, OTC, ASS1, and ASL) or the cofactor producer (NAGS) results in the accumulation of ammonia and other precursor metabolites during the first few days of life.
Because no effective secondary clearance system for ammonia exists, complete disruption of this pathway results in the rapid accumulation of ammonia and development of related symptoms. Patients with complete defects normally present in the newborn period, when the immaturity of the neonatal liver accentuates defects in the urea cycle enzymes [Pearson et al 2001, Summar 2001, Summar & Tuchman 2001]. Infants with a urea cycle disorder appear normal at birth but rapidly develop cerebral edema and the related signs of lethargy; anorexia; hyper- or hypoventilation; hypothermia; seizures; neurologic posturing; and coma.
Because newborns are usually discharged from the hospital within one to two days after birth, the symptoms of a urea cycle disorder often develop when the child is at home and may not be recognized in a timely manner by the family and primary care physician. The typical initial symptoms of a child with hyperammonemia are nonspecific: failure to feed, loss of thermoregulation with a low core temperature, and somnolence [Summar 2001].
Symptoms progress from somnolence to lethargy and coma. Abnormal posturing and encephalopathy are often related to the degree of central nervous system swelling and pressure upon the brain stem [Summar 2001]. About 50% of neonates with severe hyperammonemia may have seizures, some without overt clinical manifestations. Individuals with closed cranial sutures are at higher risk for rapid neurologic deterioration from the cerebral edema that results from ammonia elevation. Hyperventilation secondary to the effect of hyperammonemia on the brain stem, a common early finding in hyperammonemic attacks, results in respiratory alkalosis. Hypoventilation and respiratory arrest follow as pressure increases on the brain stem. Severity of neurologic sequelae is variable and correlates with duration of initial hyperammonemia.
With rapid identification and current treatment strategies, survival of neonates with hyperammonemia has improved dramatically in the last few decades [Summar 2001, Summar & Tuchman 2001, Enns et al 2007 (click
for full text), Summar et al 2008, Tuchman et al 2008, Krivitzky et al 2009].
In milder (or partial) urea cycle enzyme deficiencies, ammonia accumulation may be triggered by illness or stress at almost any time of life, resulting in multiple mild elevations of plasma ammonia concentration. The hyperammonemia is typically less severe and the symptoms more subtle than the neonatal presentation of a UCD. In individuals with partial enzyme deficiencies, the first recognized clinical episode may be delayed for months or years. Although the clinical abnormalities vary somewhat with the specific urea cycle disorder, in most the hyperammonemic episode is marked by loss of appetite, vomiting, lethargy, and behavioral abnormalities. Sleep disorders, delusions, hallucinations, and psychosis may occur. An encephalopathic (slow-wave) EEG pattern may be observed during hyperammonemia and nonspecific brain atrophy may be seen subsequently on MRI.
Defects in the final enzyme in the pathway (ARG) cause hyperargininemia, a more subtle disorder involving neurologic symptoms; however, neonatal hyperammonemia has been rarely reported. (See Arginase Deficiency.)
Neurologic aspects of UCDs. Ammonia can cause brain damage through a variety of proposed mechanisms, a major component of which is cerebral edema. The specific roles of ammonia, glutamate, and glutamine in cerebral edema are still under investigation but are thought to affect the aquaporin system and water and potassium homeostasis in brain [Lichter-Konecki 2008, Lichter-Konecki et al 2008, Albrecht et al 2010].
Damage resulting from acute hyperammonemia in infancy resembles that seen in hypoxic-ischemic events or stroke. Lacunar infarcts and white matter disruption are common findings.
Chronic hyperammonemia may disrupt ion-gradients and neurotransmitters, transport of metabolites, mitochondrial function, and the ratio of alpha-ketoglutarate/glutamate/glutamine.
Seizures are common in acute hyperammonemia and may result from cerebral damage. Recent findings suggest that subclinical seizures are common in acute hyperammonemic episodes and their effects on cerebral metabolism in an otherwise compromised state should be addressed (see Treatment of Manifestations). (Note: Valproic acid should be avoided because of its effects on CPS1 function. See Agents/Circumstances to Avoid.)
Newer neuroimaging techniques that provide information about the timing, extent, reversibility, and possible mechanism of neural injury in a noninvasive manner can be used as an adjunct to predict clinical and neurocognitive outcome [Gropman 2010].
The limitations of routine neuroimaging:
Advanced imaging sequences such as magnetic resonance spectroscopy (MRS), diffusion tensor imaging (DTI), and functional magnetic resonance imaging (fMRI) provide additional details about the pattern and type of injury and have shed light on various neurologic problems seen in urea cycle disorders.
Historically the outcome of newborns with hyperammonemia was considered poor [Brusilow 1995]. More recent data from the NIH-sponsored longitudinal study on patients treated with the more recent protocols show IQ measures within a less severe range.
Table 1. Cognitive and Adaptive Outcome in Children with UCD Age 3-16 Years
| Age 3-5 | Age 6-16 | |||
|---|---|---|---|---|
| Age at Onset | ||||
| Neonatal 1 (n=5) | Late 2 (n=7) | Neonatal 1 (n=8) | Late 2 (n=39) | |
| WASI/WPPSI-3 Composite Scores 3 (SD) | ||||
| Verbal IQ | 81.3 (16.6) | 101.7 (24.4) | 72.9 (14.3) | 94.3 (21.7) |
| Performance IQ | 77.7 (15.0) | 95.6 (17.4) | 74.4 (11.7) | 89.5 (20.4) |
| Full Scale IQ | 77.7 (16.3) | 99.6 (22.6) | 71.4 (12.8) | 94.1 (22.0) |
| ABAS-II 3 (SD) | ||||
| General adaptive composite | 73.2 (31.2) | 91.4 (23.6) | 66.0 (17.9) | 84.4 (21.6) |
Adapted from Krivitzky et al [2009]
1. Clinical presentation in 1st month
2. Clinical onset after 1st month or diagnosis based on family history
3. Clinically significant difference between groups for cognitive and adaptive outcome
The diagnosis of a urea cycle disorder in a symptomatic individual is based on clinical, biochemical, and molecular genetic data.
Family history. A three-generation family history with attention to other relatives (particularly children) with neurologic signs and symptoms suggestive of UCD should be obtained. Documentation of relevant findings in relatives can be accomplished either through direct examination of those individuals or review of their medical records including the results of biochemical testing, molecular genetic testing, and autopsy examination. A family history consistent with X-linked inheritance suggests OTC deficiency.
Physical examination. No findings on physical examination distinguish among the six types of urea cycle defect; however, trichorrhexis nodosa can be suggestive of ASL deficiency and progressive spasticity of the lower extremities of arginase deficiency.
The algorithm in Figure 2 may assist with the evaluation of a newborn with hyperammonemia. A plasma ammonia concentration of 150 μmol/L or higher associated with a normal anion gap and a normal plasma glucose concentration is a strong indication of a UCD [Summar & Tuchman 2001].

Figure 2. Steps in the evaluation of a newborn with hyperammonemia
Figure 3 highlights the use of the following recommended diagnostic tests to identify the specific urea cycle disorder.

Figure 3. Testing used in the diagnosis of urea cycle disorders
Serum ammonia concentration elevation is usually the first identified laboratory abnormality in most of the urea cycle disorders.
Quantitative plasma amino acid analysis can be used to arrive at a tentative diagnosis. (As the liver is not fully mature, affected newborns often have plasma amino acid concentrations that are quite different from those in older children and adults.)
Urinary orotic acid is measured to distinguish CPS1 deficiency from OTC deficiency. It is normal or low in CPS1 deficiency and significantly elevated in OTC deficiency. Note: Urinary orotic acid excretion can also be increased in argininemia (ARG deficiency) and citrullinemia type I (ASS1 deficiency).
Molecular genetic testing is used for diagnosis, carrier detection, and prenatal diagnosis for all six UCDs (see Table 2). It has supplanted measurement of enzyme activity as the definitive diagnostic test.
Table 2. Urea Cycle Disorders: Molecular Genetics
| Disease Name | Gene Symbol | Protein Name | Test Availability |
|---|---|---|---|
| Carbamoylphosphate synthetase I deficiency | CPS1 1 | Carbamoyl-phosphate synthase | Clinical |
| Ornithine transcarbamylase deficiency | OTC | Ornithine carbamoyltransferase | Clinical |
| ASS deficiency (Citrullinemia type I) | ASS1 | Argininosuccinate synthase | Clinical |
| ASL deficiency (Argininosuccinicaciduria) | ASL | Argininosuccinate lyase | Clinical |
| Arginase deficiency | ARG1 | Arginase-1 | Clinical |
| NAGS deficiency | NAGS | N-acetylglutamate synthase | Clinical |
1. Summar et al [2003]
Enzyme activity. If molecular testing is uninformative, the following disorders can be diagnosed by assay of enzyme activity:
Current extended newborn screening panels using tandem mass spectrometry detect abnormal concentrations of analytes associated with ASS1 deficiency, ASL deficiency, and arginase deficiency although the sensitivity and specificity of such screening for these disorders is unknown. In addition, some newborn screening programs are investigating methods to detect OTC deficiency and the proximal urea cycle defects.
Some caveats regarding newborn screening for urea cycle defects:
A number of other disorders that perturb the liver can result in hyperammonemia and mimic the effects of a urea cycle disorder. The most common/significant ones are viral infection of the liver and vascular bypass of the liver.
Diseases of the liver and biliary tract
Medications
Inborn errors of metabolism
Note: Some experts, including the Urea Cycle Disorders Consortium, a Rare Disease Clinical Research Consortium, count citrin deficiency and HHH syndrome as transporter defects among the urea cycle disorders, making the total number of urea cycle disorders eight (six enzyme deficiencies and two transporter defects).
Note to clinicians: For a patient-specific ‘simultaneous consult’ related to the urea cycle disorders, go to
, an interactive diagnostic decision support software tool that provides differential diagnoses based on patient findings (registration or institutional access required).
The incidence of UCDs is estimated to be at least 1:30,000 births; partial defects may make the number much higher.
Genetic counseling is the process of providing individuals and families with information on the nature, inheritance, and implications of genetic disorders to help them make informed medical and personal decisions. The following section deals with genetic risk assessment and the use of family history and genetic testing to clarify genetic status for family members. This section is not meant to address all personal, cultural, or ethical issues that individuals may face or to substitute for consultation with a genetics professional. —ED.
Deficiencies of CPS1, ASS1, ASL, NAGS, and ARG are inherited in an autosomal recessive manner.
OTC deficiency is inherited in an X-linked manner.
Parents of a proband
Sibs of a proband
Offspring of a proband. The offspring of an affected individual are obligate heterozygotes (carriers) for one mutant allele.
Molecular genetic testing is possible for at-risk family members for all five disorders if the disease-causing alleles have been identified in the family.
Parents of a male proband
Parents of a female proband
Sibs of a male proband
Sibs of a female proband
Offspring of a male proband
Offspring of a female proband. Women with an OTC mutation have a 50% chance of transmitting the disease-causing mutation to each child; sons who inherit the mutation will be affected; daughters will have a range of possible phenotypic expression.
Carrier detection for OTC deficiency is possible by molecular genetic testing if the disease-causing allele has been identified in the family.
See Management, Evaluation of Relatives at Risk for information on evaluating at-risk relatives for the purpose of early diagnosis and treatment.
OTC deficiency
Family planning
DNA banking is the storage of DNA (typically extracted from white blood cells) for possible future use. Because it is likely that testing methodology and our understanding of genes, mutations, and diseases will improve in the future, consideration should be given to banking DNA of affected individuals.
Molecular genetic testing. If the disease-causing mutation(s) have been identified in the family, prenatal diagnosis for pregnancies at increased risk is possible by analysis of DNA extracted from fetal cells obtained by amniocentesis (usually performed at ~15-18 weeks’ gestation) or chorionic villus sampling (usually performed at ~10-12 weeks’ gestation).
In families in which the mutation(s) cannot be detected by molecular genetic testing, linkage analysis is an option.
Note: Gestational age is expressed as menstrual weeks calculated either from the first day of the last normal menstrual period or by ultrasound measurements.
Preimplantation genetic diagnosis may be an option for some families in which the disease-causing mutations have been identified.
GeneReviews staff has selected the following disease-specific and/or umbrella support organizations and/or registries for the benefit of individuals with this disorder and their families. GeneReviews is not responsible for the information provided by other organizations. For information on selection criteria, click here.
To establish the extent of disease and needs of an individual diagnosed with a urea cycle defect the following evaluations are recommended:
The extent of disease in an individual diagnosed with a urea cycle disorder can be estimated by the rapidity of onset of neurologic symptoms, the degree to which the brain is affected, and to a lesser extent the serum ammonia concentration.
Once a diagnosis of a UCD is made, treatment should be tailored to the specific urea cycle disorder [Summar 2001 (click
for full text), Summar & Tuchman 2001 (click
for full text)]. Care of an infant should be provided by a team coordinated by a metabolic specialist in a tertiary care center. In the acute phase, the mainstays of treatment are the following:
1. Rapidly return plasma ammonia concentrations to normal physiologic levels. This is necessary even without a definitive diagnosis given the toxic effect of elevated plasma/serum ammonia concentration. The best way to reduce plasma ammonia concentration quickly is by dialysis. The faster the flow rate, the faster the clearance. The method employed depends on the affected individual's circumstances and available resources.
2. Perform pharmacologic interventions to allow alternative pathway excretion of excessive nitrogen (see Table 3)
Table 3. IV Ammonia Scavenger Therapy Protocol
| Deficiency | Patient Weight | Components of Infusion Solution | Dosage Provided | Administration | |||
|---|---|---|---|---|---|---|---|
| Sodium phenylacetate & sodium benzoate 1, 2 | Arginine HCl injection, 10% 2 | Sodium phenyl-acetate | Sodium benzoate | Arginine HCl | |||
| CPS & OTC | 0-20 kg | 2.5 mL/kg | 2.0 mL/kg | 250 mg/kg | 250 mg/kg | 200 mg/kg | Loading 3 Maintenance 4 |
| ASS & ASL | 2.5 mL/kg | 6.0 mL/kg | 250 mg/kg | 250 mg/kg | 600 mg/kg | ||
| CPS & OTC | >20 kg | 55 mL/m2 | 2.0 mL/kg | 5.5 g/m2 | 5.5 g/m2 | 4000 mg/m2 | |
| ASS & ASL | 55 mL/m2 | 6.0 mL/kg | 5.5 g/m2 | 5.5 g/m2 | 12000 mg/m2 | ||
1. Sodium phenylacetate/sodium benzoate must be diluted with sterile dextrose injection 10% before administration.
2. Before dilution
3. >90-120 minutes
4. >24 hours; arginine infusion not to exceed 150 mg/kg/h
3. Treat catabolic state with calories from glucose, fats, and essential amino acids. The introduction of nutrition support in the following manner is necessary for patients on dialysis or hemofiltration in order to resolve the catabolic state while avoiding overuse of enteral feeds.
4. Reduce the risk for neurologic damage
Note: In patients with prolonged hyperammonemic coma and evidence for severe neurologic damage, the relative risks versus benefits of all the treatments discussed above should be considered.
Decrease nitrogen load with dietary restriction of protein.
Use nitrogen scavengers to provide alternative routes for nitrogen disposal.
Prompt replacement of citrulline or arginine may be necessary depending on whether the defect is in a proximal or distal urea cycle disorder. Dosing of IV arginine in proximal urea cycle disorders begins at 200 mg/kg (see Table 3) but may be adjusted to maintain plasma arginine concentration around the 75th percentile. Note: Following liver transplantation supplementation with either arginine or citrulline may still be necessary since the gut is considered the primary exporter of these compounds.
Carbamyl glutamate (Carbaglu) may be used to promote normal or near-normal function of the CPS1 enzyme in NAGS deficiency and in individuals with CPS1 deficiency who are responsive to therapy.
Liver transplantation
Prevention of hyperammonemic episodes is focused on restriction of dietary protein through low-protein diet, use of specialized formulas, and administration of oral nitrogen scavenging drugs balanced with careful supplementation of essential amino acids (see Treatment of Manifestations).
Over-restriction of protein/amino acids is one of the most common causes for reaccumulation of ammonia and poor growth [Author, personal observation]. Gastrostomy tube feedings help avoid malnutrition in patients who self-restrict protein intake.
Other
The following measures are appropriate:
The following should be avoided or regarded as cause for alert:
Molecular genetic testing (in those families in which the disease-causing mutations are known) can identify affected at-risk relatives before symptoms occur, allowing prompt intervention with dietary therapy and other measures to prevent hyperammonemia.
See Genetic Counseling for issues related to evaluation of at-risk relatives for genetic counseling purposes.
The NIH-funded Urea Cycle Disorders Consortium provides expert diagnosis and treatment of urea cycle disorders as well as clinical and therapeutic studies.
Search ClinicalTrials.gov for access to information on clinical studies for a wide range of diseases and conditions.
Mannitol is thought to be ineffective in treating the hyperammonemia-related cerebral edema of the UCDs.
Medical Genetic Searches: A specialized PubMed search designed for clinicians that is located on the PubMed Clinical Queries page 
Kimberly A Chapman, MD, PhD (2011-present)
Andrea Gropman, MD (2011-present)
Brendan C Lanpher, MD (2011-present)
Uta Lichter-Konecki, MD, PhD (2011-present)
Marshall L Summar, MD (2003-present)
Mendel Tuchman, MD; Children's National Medical Center (2003-2005)
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