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    Phenylalanine, tyrosine and tryptophan biosynthesis

    Type
    :
    pathway
    Taxonomic scope
    :
    organism-specific biosystem
    Organism
    :
    Candidatus Chloracidobacterium thermophilum B
    BSID:
    519572
    KEGG
    : ctm00400



    BioSystem Help


    ASN.1XMLJSONBioSystem Help

    Proteins Genes Compounds

      Supplemental Content

      Related information

      • Sequences
        • Gene (all)
          Genes contained in the BioSystem
        • Proteins
          Proteins involved in biosystems. The association between the proteins and biosystems was made using the method described in the data processing section of the BioSystems help document.
        • Protein Clusters
          Protein Clusters database records that are linked to the proteins involved in the biosystem. The association between the proteins and biosystems was made using the method described in the data processing section of the BioSystems help document. The Protein Clusters database contains both curated and uncurated clusters of proteins (from four major groups: prokaryotes, bacteriophages and the mitochondrial and chloroplast organelles) that are grouped by sequence similarity.
        • Conserved Domains
          Conserved domains that are specific hits to the proteins involved in biosystems, representing high confidence functional annotations. The association between the proteins and biosystems was made using the method described in the data processing section of the BioSystems help document.
      • Small molecules
        • PubChem Compounds
          Compounds involved in biosystems. The association between the compounds and biosystems was made using the method described in the data processing section of the BioSystems help document.
        • PubChem Substances
          Substances involved in biosystems. The association between the substances and biosystems was made using the method described in the data processing section of the BioSystems help document.
      • Related BioSystems
        • Conserved BioSystems
          The conserved biosystem, if one is available, that corresponds to an organism specific biosystem. Conserved biosystems are canonical biosystems that are used to group together orthologous, organism specific biosystems.
        • Subset BioSystems
          Biosystems that are one node below the one currently being viewed, according to a hierarchical organization used by the source database.
        • Similar BioSystems
          Biosystems share at least one identical protein sequence from the same source organism. In other words, the shared protein is in the same protein identity group ("PIG," a group of proteins that are identical in sequence) and has the same Taxonomy ID.
        • Linked BioSystems
          Biosystems that the source database has explicitly stated are connected in some way.
      • Other links
        • BioAssays via Actives
          BioAssays in which compounds from biosystems have been found to be active. The association between the compounds and biosystems was made using the method described in the data processing section of the BioSystems help document.
        • Taxonomy
          The source organisms of the biosytems, whose Taxonomy IDs were provided in the biosystem records deposited by the source database. For additional information, see the data processing/taxonomy section of the BioSystems help document.

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