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MIGS Cultured Bacterial/Archaeal sample from Campylobacter upsaliensis JV21

Identifiers
BioSample: SAMN00216973; SRA: SRS173759
Organism
Campylobacter upsaliensis JV21
cellular organisms; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter; Campylobacter upsaliensis
Package
MIGS: cultured bacteria/archaea; version 4.0
Attributes
collection datenot determined
estimated size1622000
isolation and growth conditionnot determined
hostHomo sapiens
latitude and longitudenot determined
environment biometerrestrial biome [ENVO:00000446]
environment featureHomo sapiens-associated habitat [ENVO:00009003]
investigation typemissing
host taxonomy ID9606 (9606)
project nameCampylobacter upsaliensis JV21
geographic locationnot determined
source material identifiersBEI HM-297
environment materialbiological product [ENVO:02000043]
reference for biomaterialnot determined
number of repliconsnot determined
environmental packagemissing
strainJV21
isolation sourcegastrointestinal tract
finishing strategy (depth of coverage)Level 2: High-Quality Draft46.6x;49
project_typeReference Genome
misc_param: HMP body sitenot determined
nucleic acid extractionnot determined
assemblyNewbler v. 2.3-04192010
misc_param: HMP supersitegastrointestinal_tract
sophttp://hmpdacc.org/doc/CommonGeneAnnotation_SOP.pdf
sequencing method454-Paired-end
Description

Campylobacter upsaliensis strain JV21

Keywords: GSC:MIxS;MIGS:4.0

Links
Homo sapiens Microbiome Project at Baylor College of Medicine
BioProject
PRJNA53193 Campylobacter upsaliensis JV21
Retrieve all samples from this project

Submission
BCM; 2011-03-02
Accession:
SAMN00216973
ID:
216973

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