Display Settings:

Format

Send to:

Choose Destination

MIGS Cultured Bacterial/Archaeal sample from Campylobacter rectus RM3267

Identifiers
BioSample: SAMN00000716; Sample name: HMP048-454 Sample; SRA: SRS001044
Organism
Campylobacter rectus RM3267
cellular organisms; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter; Campylobacter rectus
Package
MIGS: cultured bacteria/archaea; version 4.0
Attributes
collection datenot determined
estimated size2513000
isolation and growth conditionnot determined
hostHomo sapiens
latitude and longitudenot determined
environment biometerrestrial biome [ENVO:00000446]
investigation typemissing
environment featurehuman-associated habitat [ENVO:00009003]
host taxonomy ID9606 (9606)
project nameCampylobacter rectus RM3267, CCUG 20446
geographic locationnot determined
source material identifiersCCUG 20446, ATCC 33238
environment materialbiological product [ENVO:02000043]
reference for biomaterialnot determined
number of repliconsnot determined
strainRM3267
environmental packagemissing
isolation sourceoral
finishing strategy (depth of coverage)Level 2: High-Quality Draft26x;89
project_typeReference Genome
misc_param: HMP body siteGingival crevices
nucleic acid extractionnot determined
assemblyNewbler v. 1.1.03.24-64-7
misc_param: HMP supersiteoral
sequencing methodnot determined
sophttp://hmpdacc.org/doc/CommonGeneAnnotation_SOP.pdf
Description

Campylobacter rectus is a gram-negative, microaerophilic, rod-shaped bacterium found in the gingival crevice. The bacterium is motile and has a flagellum and surface layer (S-layer). It has been associated with periodontitis and the S-layer is a candidate as a cause of the bacterium's virulence.

Keywords: GSC:MIxS;MIGS:4.0

Links
Human Microbiome Project at J. Craig Venter Institute
BioProjects
PRJNA224116
Retrieve all samples from this project

PRJNA31017 Campylobacter rectus RM3267
Retrieve all samples from this project

Submission
JCVI; 2008-10-03
Accession:
SAMN00000716
ID:
716

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Write to the Help Desk