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Results: 1 to 20 of 307

1.

Schizosaccharomyces pombe strain:972

Schizosaccharomyces pombe strain:972 Epigenomics

Organism:
Schizosaccharomyces pombe
Taxonomy:
Schizosaccharomyces pombe (fission yeast)
Project data type: Epigenomics
Attributes :
Scope: Monoisolate; Material: Genome; Capture: Other; Method Type: Sequencing
Cardiff University
Accession:
PRJNA279551
ID:
279551
2.

Nitric oxide signaling and its role in oxidative stress response in Schizosaccharomyces pombe

Organism:
Schizosaccharomyces pombe
Taxonomy:
Schizosaccharomyces pombe (fission yeast)
Project data type: Transcriptome or Gene expression
Attributes :
Scope: Multiisolate; Material: Transcriptome; Capture: Whole; Method Type: Array
Nara Institute of Science and Technology
Accession:
PRJNA279395
ID:
279395
3.

The Fission Yeast Non-Coding Transcriptome

Interrogation of the S. pombe transcriptome using strand specific poly-A enriched RNA sequencing, with the aim to identify and quantify regulatory lncRNA under various physiological conditions and genetic perturbations.

Project data type: Other
Attributes :
Scope: Other; Material: Other; Capture: Other; Method Type: Sequencing
Dbitton
Accession:
PRJEB7403
ID:
279363
4.

Widespread exon-skipping triggers degradation by nuclear RNA surveillance in fission yeast

Interrogation of the S. pombe transcriptome using strand specific RNA sequencing (polyA enriched,ribosomal depleted total RNA). A total of 116 transcriptomes were interrogated in the study with the aim to identify exon-skipping events. Expression level summaries were not computed. Only exon-exon junction and exon-skipping diagnostic reads were used throughout. The vast majority (110/116) of transcriptomes are published and available elsewhere, while only 6 transcriptomes were sequenced here: two biological repeats of dhp1-ts and prp2-ts, a single wild-type strain and a single transcription compromised strain - nmt1-rpb4. Note that growth and library construction protocols varied across the samples.

Project data type: Other
Attributes :
Scope: Other; Material: Other; Capture: Other; Method Type: Sequencing
Dbitton
Accession:
PRJEB7379
ID:
279362
5.

Schizosaccharomyces pombe

Schizosaccharomyces pombe Raw sequence reads of Tf1 insertions within Sap1+ and Sap1-1 mutant cells

Taxonomy:
Schizosaccharomyces pombe (fission yeast)
Project data type: Raw sequence reads
Attributes :
Scope: Multiisolate; Material: Purified Chromosome; Capture: Other; Method Type: Sequencing
NIH
Accession:
PRJNA279274
ID:
279274
6.

High-resolution nucleosome positioning from ATAC-seq chromatin accessibility data

Project data type: Other
Attributes :
Scope: Multispecies; Material: Other; Capture: Whole; Method Type: Other
Genetics, Stanford University
Accession:
PRJNA276699
ID:
276699
7.

Factors that promote H3 chromatin integrity during transcription prevent promiscuous deposition of CENP-A(Cnp1) in fission yeast

Organism:
Schizosaccharomyces pombe
Taxonomy:
Schizosaccharomyces pombe (fission yeast)
Project data type: Epigenomics
Attributes :
Scope: Multiisolate; Material: Genome; Capture: Whole; Method Type: Array
Karolinska Inst
Accession:
PRJNA275892
ID:
275892
8.

Schizosaccharomyces pombe strain:Hu2549

Nucleosome turnover in Schizosaccharomyces pombe

Organism:
Schizosaccharomyces pombe
Taxonomy:
Schizosaccharomyces pombe (fission yeast)
Project data type: Epigenomics
Attributes :
Scope: Monoisolate; Material: Genome; Capture: Whole; Method Type: Sequencing
Karolinska Institutet
Accession:
PRJNA275627
ID:
275627
9.

RNA pol II transcript abundance controls condensin accumulation at mitotically upregulated and heat shock-inducible genes in fission yeast

Organism:
Schizosaccharomyces pombe
Taxonomy:
Schizosaccharomyces pombe (fission yeast)
Project data type: Epigenomics
Attributes :
Scope: Multiisolate; Material: Genome; Capture: Whole; Method Type: Sequencing
Yanagida lab, G0 Cell Unit, Okinawa Institute of Science and Technology Graduate University
Accession:
PRJNA275552
ID:
275552
10.

S.pombe nrl1 Study

The spliceosome-associated protein Nrl1 promotes DNA repair and suppresses R-loop formation in fission yeast

Project data type: Other
Attributes :
Scope: Other; Material: Other; Capture: Other; Method Type: Sequencing
MAX F. PERUTZ LABORATORIES
Accession:
PRJEB7937
ID:
274842
11.

Schizosaccharomyces pombe

Schizosaccharomyces pombe Genome sequencing

Taxonomy:
Schizosaccharomyces pombe (fission yeast)
Project data type: Genome sequencing
Attributes :
Scope: Multiisolate; Material: Genome; Capture: Whole; Method Type: Sequencing
National Institute of Biological Sciences, Beijing
Accession:
PRJNA274300
ID:
274300
12.

Small RNA loading licenses Argonaute for assembly into a transcriptional silencing complex

Organism:
Schizosaccharomyces pombe
Taxonomy:
Schizosaccharomyces pombe (fission yeast)
Project data type: Transcriptome or Gene expression
Attributes :
Scope: Multiisolate; Material: Transcriptome; Capture: Whole; Method Type: Sequencing
Danesh Moazed, Cell Biology, Harvard Medical School
Accession:
PRJNA273446
ID:
273446
13.

Uracil Repair - A Source of DNA Glycosylase Dependent Genome Instability

Organism:
Schizosaccharomyces pombe
Taxonomy:
Schizosaccharomyces pombe (fission yeast)
Project data type: Transcriptome or Gene expression
Attributes :
Scope: Multiisolate; Material: Transcriptome; Capture: Whole; Method Type: Array
Molecular Genetics, Department of Biomedicine, University of Basel
Accession:
PRJNA271351
ID:
271351
14.

Schizosaccharomyces pombe

Schizosaccharomyces pombe Transcriptome or Gene expression

Taxonomy:
Schizosaccharomyces pombe (fission yeast)
Project data type: Transcriptome or Gene expression
Attributes :
Scope: Monoisolate; Material: Transcriptome; Capture: Whole; Method Type: Sequencing
Shanghai Jiao Tong University
Accession:
PRJNA270633
ID:
270633
15.

RNA sequencing of 968xY0036 fission yeast recombinant library

Project data type: Transcriptome or Gene expression
Attributes :
Scope: Monoisolate; Material: Transcriptome; Capture: Other; Method Type: Sequencing
CECAD, university of Cologne
Accession:
PRJEB6554
ID:
269355
16.

H2A.Z (pht1) ChIP-seq data in 968, Y0036, and swc5-del strains

Project data type: Other
Attributes :
Scope: Monoisolate; Material: Other; Capture: Other; Method Type: Sequencing
CECAD, university of Cologne
Accession:
PRJEB6522
ID:
269354
17.

Pombe_RBP_profiling

Project data type: Transcriptome or Gene expression
Attributes :
Scope: Monoisolate; Material: Transcriptome; Capture: Other; Method Type: Sequencing
Department of Biochemistry, University of Cambridge, UK
Accession:
PRJEB6654
ID:
269029
18.

The N-terminal Tail of CENP-A Confers Epigenetic Stability to Centromeres via the CENP-T Branch of the CCAN in Fission Yeast

Organism:
Schizosaccharomyces pombe
Taxonomy:
Schizosaccharomyces pombe (fission yeast)
Project data type: Epigenomics
Attributes :
Scope: Multiisolate; Material: Genome; Capture: Whole; Method Type: Sequencing
Desai laboratory, Cellular & Molecular Medicine, UCSD/LICR
Accession:
PRJNA267552
ID:
267552
19.

Epigenetic inheritance uncoupled from sequence-specific recruitment

Organism:
Schizosaccharomyces pombe
Taxonomy:
Schizosaccharomyces pombe (fission yeast)
Project data type: Epigenomics
Attributes :
Scope: Multiisolate; Material: Genome; Capture: Whole; Method Type: Sequencing
Danesh Moazed, Cell Biology, Harvard Medical School
Accession:
PRJNA267239
ID:
267239
20.

Heterochromatin assembly and transcriptome repression by Set1 in coordination with a class II histone deacetylase

Organism:
Schizosaccharomyces pombe
Taxonomy:
Schizosaccharomyces pombe (fission yeast)
Project data type: Other
Attributes :
Scope: Multiisolate; Material: Other; Capture: Whole; Method Type: Array
Biology, Boston College
Accession:
PRJNA267234
ID:
267234

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