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Accession: PRJNA171119 ID: 171119

Viral pathogen detection and discovery by clinical metagenomics

The Chiu laboratory and UCSF-Abbott Viral Diagnostics and Discovery Center (VDDC) at University of California, San Francisco applies pan-viral microarray and next-generation sequencing strategies to identify unexpected and novel viruses in clinical samples from patients with acute and chronic illnesses.
Related Resources:
Project Type:Other (Subtype:Disease)
Relevance:Medical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (Genomic DNA)1
SRA Experiments9
Protein Sequences35
Publications
PubMed4
PMC3
Other datasets
BioSample10
GEO DataSets2
GEO Data Details
ParameterValue
Data volume, Spots777745
Data volume, Processed Mbytes13
Data volume, Supplementary Mbytes628
SRA Data Details
ParameterValue
Data volume, Gbases14
Data volume, Mbytes9391
This project encompasses the following 4 sub-projects:
Project TypeNumber of Projects
Metagenome2
BioProject
accession
OrganismTitle
PRJNA171964viral metagenomeviral metagenome (University of California,...)
PRJNA217527viral metagenomeviral metagenome (University of California,...)
Umbrella project2
BioProject
accession
NameTitle
PRJNA70953H1N1 Influenza projectH1N1 Influenza project (UCSF-Abbott Viral Diagnostics...)
PRJNA70949Titi monkey adenovirusTiti monkey adenovirus (UCSF-Abbott Viral Diagnostics...)
Publications:
  • Chen EC et al., "Cross-species transmission of a novel adenovirus associated with a fulminant pneumonia outbreak in a new world monkey colony.", PLoS Pathog, 2011 Jul 14;7(7):e1002155
    More...
Grants:
"Broad Detection of Infectious Agents in Blood by Microarrays and Deep Sequencing" (Grant id R01HL105704, NIH)
Submission:
Registration date: 22-Jul-2012
University of California, San Francisco

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