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Accession: PRJNA28331 ID: 28331

Human Microbiome Project (HMP) Reference Genomes

Genomes of microorganisms that have been isolated in and on the human body, to be used as Reference Genomes for the Human Microbiome Project (HMP)

Over 1000 microbes from cultured and uncultured bacteria that have been previously isolated from the human body, plus several non-bacterial microbes, will be sequenced. Combined with existing and other planned efforts, the total reference collection could reach 3000 genomes. These sequences will provide a benchmark for analysis of the sequence data generated in the 16S rRNA Sequencing and Metagenomes components of HMP.
AccessionPRJNA28331
TypeGenome sequencing, Umbrella project (Subtype:Funding initiative)
Publications
  • Ribeiro FJ et al., "Finished bacterial genomes from shotgun sequence data.", Genome Res, 2012 Jul 24;22(11):2270-7
More...
SubmissionRegistration date: 10-Jan-2008
NIH Human Microbiome Consortium
NCBI Links
Related Resources
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)230232
WGS master1599
Genomic DNA325
Map3
SRA Experiments3958
Capillary Traces (Trace Archive)1
Protein Sequences4662421
Publications
PubMed45
PMC23
Other datasets
BioSample2919
Assembly1629
SRA Data Details
ParameterValue
Data volume, Gbases2,464
Data volume, Tbytes1.98
Human Microbiome Project (HMP) Reference Genomes encompasses the following 2947 sub-projects:
Project TypeNumber of Projects
Genome sequencing

32
1587
617
710
2946
BioProject
accession
Assembly
level
NameTitle
PRJNA33011 Scaffolds or contigsAbiotrophia defectiva ATCC 49176Reference genome for the Human Microbiome Project (Washington University Genome...)
PRJNA269830 SRA or TraceAbiotrophia sp. HMSC24B09HMP reference genome (The Genome Institute at Washington...)
PRJNA197021 SRA or TraceAcetanaerobacterium sp. hmp_mda_pilot_jcvi_0106HMP reference genome (Broad Institute)
PRJNA197022 SRA or TraceAcetanaerobacterium sp. hmp_mda_pilot_jcvi_0107HMP reference genome (Broad Institute)
PRJNA197024 SRA or TraceAcetanaerobacterium sp. hmp_mda_pilot_jcvi_0109HMP reference genome (Broad Institute)
List all 2946 'Genome sequencing' projects...