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Accession: PRJNA28117 ID: 28117

13 Healthy Human Gut Metagenomes

Gut metagenomes collected from 13 healthy individuals

Numerous microbes inhabit the human intestine, many of which are uncharacterized or uncultivable. They form a complex microbial community that deeply affects human physiology. To identify the genomic features common to all human gut microbiomes as well as those variable among them, we performed a large-scale comparative metagenomic analysis of fecal samples from 13 healthy individuals of various ages, including unweaned infants. All the subjects were healthy Japanese individuals. All subjects or their parents were informed of the purpose and protocol of this study. None of the subjects were given dietary restrictions except for antibiotics, probiotics, fermented foods (fermented beans, yogurt, etc.), and well-known functional foods for at least 4 weeks prior to sampling. More...
AccessionPRJNA28117
TypeGenome sequencing, Umbrella Metagenome project (Subtype:Metagenome)
Organismhuman gut metagenome[Taxonomy ID: 408170]
unclassified sequences; metagenomes; organismal metagenomes; human gut metagenome
PublicationsKurokawa K et al., "Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes.", DNA Res, 2007 Oct 3;14(4):169-81
SubmissionRegistration date: 17-Dec-2007
The University of Tokyo
NCBI Links
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)167131
WGS master13
Publications
PubMed1
PMC1
Other datasets
BioSample13
13 Healthy Human Gut Metagenomes encompasses the following 13 sub-projects:
Project TypeNumber of Projects
Metagenome13
BioProject
accession
OrganismTitle
PRJNA27855human gut metagenomeHuman gut metagenome collected from healthy human sample F1-S (adult male) (The University of Tokyo)
PRJNA27857human gut metagenomeHuman gut metagenome collected from healthy human sample F1-T (adult female) (The University of Tokyo)
PRJNA27859human gut metagenomeHuman gut metagenome collected from healthy human sample F1-U (infant female) (The University of Tokyo)
PRJNA27861human gut metagenomeHuman gut metagenome collected from healthy human sample F2-V (adult male) (The University of Tokyo)
PRJNA27863human gut metagenomeHuman gut metagenome collected from healthy human sample F2-W (adult female) (The University of Tokyo)
List all 13 'Metagenome' projects...

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