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Accession: PRJDB3830 ID: 287330

Veillonella

Whole genome sequences of oral Veillonella, Analyzing roles of Veillonella in oral biofilm.

It is already reported that Veillonella has important roles to form oral biofilms at early stage. More...

Accession	PRJDB3830
Data Type	Genome sequencing and assembly
Scope	Multispecies
Organism	Veillonella[Taxonomy ID: 29465] Bacteria; Bacillota; Negativicutes; Veillonellales; Veillonellaceae; Veillonella
Publications (total 3) Less...	Mashima I et al., "Veillonella nakazawae sp. nov., an anaerobic Gram-negative coccus isolated from the oral cavity of Japanese children.", Int J Syst Evol Microbiol, 2021 Jan;71(1) More... Mashima I et al., "Veillonella nakazawae sp. nov., an anaerobic Gram-negative coccus isolated from the oral cavity of Japanese children.", Int J Syst Evol Microbiol, 2021 Jan;71(1) Mashima I et al., "Veillonella infantium sp. nov., an anaerobic, Gram-stain-negative coccus isolated from tongue biofilm of a Thai child.", Int J Syst Evol Microbiol, 2018 Apr;68(4):1101-1106 Mashima I et al., "Draft Genome Sequence of Veillonella tobetsuensis ATCC BAA-2400T Isolated from Human Tongue Biofilm.", Genome Announc, 2015 Aug 20;3(4) Less...
Grants	"Scientific Research (C)" (Grant ID 26462793, Japan Society for the Promotion of Sciences)
Submission	Registration date: 17-Jun-2015 Health Sciences University of Hokkaido
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	200
WGS master	11
Genomic DNA	2
SRA Experiments	14
Protein Sequences	22375
Publications
PubMed	3
PMC	1
Other datasets
BioSample	13
Assembly	13

Assembly details:

Assembly level

Number of Assemblies

Complete genome

Complete genome

Scaffold

Contig

2
1
10
13

Assembly	Level	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_002959915.1		PPDE00000000		SAMD00090152	ATCC 17744	Veillonella atypica KON
GCA_002959855.1		PPDB00000000		SAMD00090155	JCM 15641	Veillonella denticariosi JCM 15641
GCA_002959895.1		PPDD00000000		SAMD00090153	T11011-4	Veillonella infantium
GCA_013393365.1			1	SAMD00199103	T1-7	Veillonella nakazawae
GCA_002959775.1		PPCX00000000		SAMD00090159	JCM 15642	Veillonella rogosae JCM 15642
GCA_018406505.1			1	SAMD00199104	S12025-13	Veillonella sp. S12025-13
GCA_002959835.1		PPDA00000000		SAMD00090156	S13053-19	Veillonella sp. S13053-19
GCA_002959795.1		PPCY00000000		SAMD00090158	S13054-11	Veillonella sp. S13054-11
GCA_002959755.1		PPCW00000000		SAMD00090160	T11011-6	Veillonella sp. T11011-6
GCA_002959875.1		PPDC00000000		SAMD00090154	T14073-2	Veillonella sp. T14073-2
GCA_002959815.1		PPCZ00000000		SAMD00090157	T34266-5	Veillonella sp. T34266-5
GCA_001078375.1		BBXI00000000		SAMD00028777	ATCC BAA-2400	Veillonella tobetsuensis
GCA_002959935.1		PPDF00000000		SAMD00090161	Y6	Veillonella tobetsuensis

SRA Data Details

Parameter	Value
Data volume, Gbases	47
Data volume, Mbytes	20945

Supplemental Content

Related information

Assembly
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BioSample
All related BioSamples
Full text in PMC
PMC links
Genome
Related Genomes
Genomic DNA
Link to genomic DNA records
Nucleotide
Related Nucleotide entry
Protein
Related Proteins
PubMed
PubMed Links
SRA
All related SRA Experiments
Taxonomy
Taxonomy Links
WGS master
Link to WGS master record(s)

LinkOut to external resources

GOLD: Gp0124694 [Genomes On Line Database]
GOLD: Gp0124694
Genomes On Line Database
2882408160: Veillonella infantium T11011-4 [Integrated Microbial Genomes]
2882408160: Veillonella infantium T11011-4
Integrated Microbial Genomes
2898788943: Veillonella sp. S13053-19 [Integrated Microbial Genomes]
2898788943: Veillonella sp. S13053-19
Integrated Microbial Genomes
2898777610: Veillonella sp. S13054-11 [Integrated Microbial Genomes]
2898777610: Veillonella sp. S13054-11
Integrated Microbial Genomes

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Veillonella
Whole genome sequences of oral Veillonella, Analyzing roles of Veillonella in oral biofilm.

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