ID 848627 - BioProject

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Accession: PRJNA848627 ID: 848627

A. thaliana commensal bacterial communities

See Genome Information for Paraburkholderia fungorum

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11 additional projects are related by organism.

In this study, we aimed at characterizing the genomic diversity at the interspecific and intraspecific levels of 7 out of the 12 most abundant and prevalent bacterial OTUs present in the leaf compartment of 168 natural populations of Arabidopsis thaliana located south-west of France.

Accession	PRJNA848627
Data Type	Genome sequencing
Scope	Multispecies
Submission	Registration date: 13-Jun-2022 INRAE
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (Genomic DNA)	38
SRA Experiments	20
Protein Sequences	101011
Other datasets
BioSample	20
Assembly	18

Assembly details:

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Assembly level

Number of Assemblies

Complete genome

Total

18
18

Assembly	Chrs	BioSample	Strain	Taxonomy
GCA_024372625.1	5	SAMN29007424	OTU4NAUVB1	Comamonadaceae bacterium OTU4NAUVB1
GCA_024123915.1	1	SAMN29007138	OTU3CAMAD1	Oxalobacteraceae bacterium OTU3CAMAD1
GCA_024123955.1	1	SAMN29007209	OTU3CINTB1	Oxalobacteraceae bacterium OTU3CINTB1
GCA_024123935.1	1	SAMN29007208	OTU3REALA1	Oxalobacteraceae bacterium OTU3REALA1
GCA_024072715.1	4	SAMN29007018	OTU2BAGNBA2	Paraburkholderia fungorum
GCA_024072595.1	4	SAMN29006833	OTU2BAGNBA1	Paraburkholderia fungorum
GCA_024072235.1	1	SAMN29009528	OTU5VILLAA1	Pseudomonas moraviensis
GCA_024072215.1	1	SAMN29008047	OTU5MASSA1	Pseudomonas moraviensis
GCA_024072135.1	1	SAMN29007430	OTU5BARRA1	Pseudomonas moraviensis
GCA_024072355.1	1	SAMN29010482	OTU6MONTID1	Pseudomonas siliginis
GCA_024072335.1	1	SAMN29010462	OTU6MONEA1	Pseudomonas siliginis
GCA_024072315.1	1	SAMN29010014	OTU6MEDAA1	Pseudomonas siliginis
GCA_024072295.1	1	SAMN29009912	OTU6ESPEB1	Pseudomonas siliginis
GCA_024072275.1	2	SAMN29009911	OTU6BANIB1	Pseudomonas siliginis
GCA_024072255.1	1	SAMN29009709	OTU6BAGNBB1	Pseudomonas siliginis
GCA_024072375.1	2	SAMN29010781	OTU29LAMAA1	Sphingomonadaceae bacterium OTU29LAMAA1
GCA_024072395.1	3	SAMN29010800	OTU29MARTA1	Sphingomonadaceae bacterium OTU29MARTA1
GCA_024072415.1	2	SAMN29010953	OTU29THOMA1	Sphingomonadaceae bacterium OTU29THOMA1

SRA Data Details

Parameter	Value
Data volume, Gbases	5
Data volume, Mbytes	3528

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A. thaliana commensal bacterial communities

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