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Genome Information for Halobacterium salinarum
Halobacterium sp. strain NRC-1. This microbe (strain ATCC 700922) is an obligately halophilic archeon that has adapted to growth under conditions of extremely high salinity. More...
Halobacterium sp. strain NRC-1. This microbe (strain ATCC 700922) is an obligately halophilic archeon that has adapted to growth under conditions of extremely high salinity. Motility is via tufts of polar flagella and intracellular gas vesicles are used for buoyancy. This organism grow aerobically and its ease of culturing combined with the availability of established methods of genetic manipulation in the laboratory make it an ideal model organism for study of the archaea.
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Project Data Type: RefSeq Genome
Attributes:Scope: Monoisolate; Material: Genome; Capture: Whole; Method type: Other
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (Genomic DNA) | 3 |
| Protein Sequences | 2622 |
| Publications |
| PubMed | 38 |
| PMC | 22 |
Publications:
- Müller JA et al., "Genomic analysis of anaerobic respiration in the archaeon Halobacterium sp. strain NRC-1: dimethyl sulfoxide and trimethylamine N-oxide as terminal electron acceptors.", J Bacteriol, 2005 Mar;187(5):1659-67
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- Müller JA et al., "Genomic analysis of anaerobic respiration in the archaeon Halobacterium sp. strain NRC-1: dimethyl sulfoxide and trimethylamine N-oxide as terminal electron acceptors.", J Bacteriol, 2005 Mar;187(5):1659-67
- Shmuely H et al., "Poorly conserved ORFs in the genome of the archaea Halobacterium sp. NRC-1 correspond to expressed proteins.", Bioinformatics, 2004 Feb 10;20(8):1248-53
- Shukla HD et al., "Complexity of gas vesicle biogenesis in Halobacterium sp. strain NRC-1: identification of five new proteins.", J Bacteriol, 2004 May;186(10):3182-6
- Wang G et al., "Arsenic resistance in Halobacterium sp. strain NRC-1 examined by using an improved gene knockout system.", J Bacteriol, 2004 May;186(10):3187-94
- Woodson JD et al., "CbiZ, an amidohydrolase enzyme required for salvaging the coenzyme B12 precursor cobinamide in archaea.", Proc Natl Acad Sci U S A, 2004 Feb 27;101(10):3591-6
- Baliga NS et al., "Systems level insights into the stress response to UV radiation in the halophilic archaeon Halobacterium NRC-1.", Genome Res, 2004 May 12;14(6):1025-35
- Goo YA et al., "Low-pass sequencing for microbial comparative genomics.", BMC Genomics, 2004 Jan 12;5(1):3
- Gruber C et al., "Halobacterium noricense sp. nov., an archaeal isolate from a bore core of an alpine Permian salt deposit, classification of Halobacterium sp. NRC-1 as a strain of H. salinarum and emended description of H. salinarum.", Extremophiles, 2004 Jul 30;8(6):431-9
- Ohtani N et al., "Identification of the first archaeal Type 1 RNase H gene from Halobacterium sp. NRC-1: archaeal RNase HI can cleave an RNA-DNA junction.", Biochem J, 2004 Aug 1;381(Pt 3):795-802
- Bonneau R et al., "Comprehensive de novo structure prediction in a systems-biology context for the archaea Halobacterium sp. NRC-1.", Genome Biol, 2004 Jul 12;5(8):R52
- Berquist BR et al., "An archaeal chromosomal autonomously replicating sequence element from an extreme halophile, Halobacterium sp. strain NRC-1.", J Bacteriol, 2003 Oct;185(20):5959-66
- Zhang R et al., "Multiple replication origins of the archaeon Halobacterium species NRC-1.", Biochem Biophys Res Commun, 2003 Mar 21;302(4):728-34
- Hutcheon GW et al., "The archaeal twin-arginine translocation pathway.", Biochem Soc Trans, 2003 Jun;31(Pt 3):686-9
- McCready S et al., "Repair of UV damage in Halobacterium salinarum.", Biochem Soc Trans, 2003 Jun;31(Pt 3):694-8
- Evilia C et al., "Aminoacylation of an unusual tRNA(Cys) from an extreme halophile.", RNA, 2003 Jul;9(7):794-801
- Woodson JD et al., "The cobY gene of the archaeon Halobacterium sp. strain NRC-1 is required for de novo cobamide synthesis.", J Bacteriol, 2003 Jan;185(1):311-6
- Woodson JD et al., "A new pathway for salvaging the coenzyme B12 precursor cobinamide in archaea requires cobinamide-phosphate synthase (CbiB) enzyme activity.", J Bacteriol, 2003 Dec;185(24):7193-201
- Goo YA et al., "Proteomic analysis of an extreme halophilic archaeon, Halobacterium sp. NRC-1.", Mol Cell Proteomics, 2003 Jul 18;2(8):506-24
- Baliga NS et al., "Coordinate regulation of energy transduction modules in Halobacterium sp. analyzed by a global systems approach.", Proc Natl Acad Sci U S A, 2002 Oct 28;99(23):14913-8
- Bolhuis A "Protein transport in the halophilic archaeon Halobacterium sp. NRC-1: a major role for the twin-arginine translocation pathway?", Microbiology, 2002 Nov;148(Pt 11):3335-46
- Kennedy SP et al., "Understanding the adaptation of Halobacterium species NRC-1 to its extreme environment through computational analysis of its genome sequence.", Genome Res, 2001 Oct;11(10):1641-50
- Baliga NS et al., "Genomic and genetic dissection of an archaeal regulon.", Proc Natl Acad Sci U S A, 2001 Feb 20;98(5):2521-5
- Peck RF et al., "brp and blh are required for synthesis of the retinal cofactor of bacteriorhodopsin in Halobacterium salinarum.", J Biol Chem, 2000 Nov 22;276(8):5739-44
- Ng WV et al., "Genome sequence of Halobacterium species NRC-1.", Proc Natl Acad Sci U S A, 2000 Oct 24;97(22):12176-81
- Baliga NS et al., "Saturation mutagenesis of the haloarchaeal bop gene promoter: identification of DNA supercoiling sensitivity sites and absence of TFB recognition element and UAS enhancer activity.", Mol Microbiol, 2000 Jun;36(5):1175-83
- Baliga NS et al., "Is gene expression in Halobacterium NRC-1 regulated by multiple TBP and TFB transcription factors?", Mol Microbiol, 2000 Jun;36(5):1184-5
- Ng WV et al., "Snapshot of a large dynamic replicon in a halophilic archaeon: megaplasmid or minichromosome?", Genome Res, 1998 Nov;8(11):1131-41
- Yang CF et al., "Genetic and topological analyses of the bop promoter of Halobacterium halobium: stimulation by DNA supercoiling and non-B-DNA structure.", J Bacteriol, 1996 Feb;178(3):840-5
- DasSarma S et al., "Wild-type gas vesicle formation requires at least ten genes in the gvp gene cluster of Halobacterium halobium plasmid pNRC100.", J Bacteriol, 1994 Dec;176(24):7646-52
- DasSarma S "Identification and analysis of the gas vesicle gene cluster on an unstable plasmid of Halobacterium halobium.", Experientia, 1993 Jul 5;49(6-7):482-6
- Halladay JT et al., "The rightward gas vesicle operon in Halobacterium plasmid pNRC100: identification of the gvpA and gvpC gene products by use of antibody probes and genetic analysis of the region downstream of gvpC.", J Bacteriol, 1993 Feb;175(3):684-92
- Ng WL et al., "Minimal replication origin of the 200-kilobase Halobacterium plasmid pNRC100.", J Bacteriol, 1993 Aug;175(15):4584-96
- Halladay JT et al., "Genetic transformation of a halophilic archaebacterium with a gas vesicle gene cluster restores its ability to float.", Gene, 1992 Sep 21;119(1):131-6
- Ng WL et al., "Structure of the gas vesicle plasmid in Halobacterium halobium: inversion isomers, inverted repeats, and insertion sequences.", J Bacteriol, 1991 Mar;173(6):1958-64
- Jones JG et al., "Structure and organization of the gas vesicle gene cluster on the Halobacterium halobium plasmid pNRC100.", Gene, 1991 Jun 15;102(1):117-22
- Ng WL et al., "Structure of the gas vesicle plasmid in Halobacterium halobium inversion isomers, inverted repeats, and insertion sequences.", J Bacteriol, 1991 Jun;173(12):3933
- Jones JG et al., "Analysis of insertion mutants reveals two new genes in the pNRC100 gas vesicle gene cluster of Halobacterium halobium.", Nucleic Acids Res, 1989 Oct 11;17(19):7785-93
- DasSarma S et al., "A plasmid-encoded gas vesicle protein gene in a halophilic archaebacterium.", Mol Microbiol, 1987 Nov;1(3):365-70
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[Taxonomy ID: 64091] Submission:
Registration date: 21-Oct-2010
NCBI, based on data from: