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    Accession: PRJNA48489 ID: 48489

    Human Microbiome Project (HMP) 16S rRNA Gene Diversity

    Examining the diversity of 16S ribosomal RNA genes in the human microbiome for the Human Microbiome Project (HMP)

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    This project is a component of the NIH Human Microbiome Project (HMP) Roadmap Project
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    3 additional projects are components of the NIH Human Microbiome Project (HMP) Roadmap Project.
    16S rRNA sequencing is being used to characterize the complexity of microbial communities at individual body sites, and to determine whether there is a core microbiome at each site. Several body sites are being studied, including the gastrointestinal and female urogenital tracts, oral cavity, nasal and pharyngeal tract, and skin. This project includes development, pilot-phase and production-phase sub-projects, each linked to their respective data sets of Sanger or second generation (eg. 454) sequences.
    Project Type:Umbrella project (Subtype:Funding initiative)
    Project Data:
    Resource NameNumber
    of Links
    Sequence data
    SRA Experiments1820
    Capillary Traces (Trace Archive)1
    Other datasets
    BioSample88435
    Genotype and Phenotype (dbGaP)14
    SRA Data Details
    ParameterValue
    Data volume, Gbases109
    Data volume, Tbytes0.33
    Human Microbiome Project (HMP) 16S rRNA Gene Diversity encompasses the following 16 sub-projects:
    Project TypeNumber of Projects
    Targeted Locus (Loci)16
    BioProject
    accession    		OrganismTitle
    PRJNA34129human metagenomeHuman Microbiome Project 16S rRNA Sanger Clinical Production Pilot (NIH Human Microbiome Consortium)
    PRJNA48333human metagenomeHuman Microbiome Project 16S rRNA 454 Clinical Production Phase I (NIH Human Microbiome Consortium)
    PRJNA48335human metagenomeHuman Microbiome Project 16S rRNA Clinical Production Pilot (NIH Human Microbiome Consortium)
    PRJNA48339human metagenomeHuman Microbiome Project 16S rRNA 454 Protocol Validation - Clinical (NIH Human Microbiome Consortium)
    PRJNA48341human metagenomeHuman Microbiome Project 16S rRNA 454 Protocol Validation - Mock (NIH Human Microbiome Consortium)
    List all 16 'Targeted Locus (Loci)' projects...
    Submission:
    Registration date: 10-May-2010
    NIH Human Microbiome Consortium

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