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Accession: PRJNA48489 ID: 48489

Human Microbiome Project (HMP) 16S rRNA Gene Diversity

Examining the diversity of 16S ribosomal RNA genes in the human microbiome for the Human Microbiome Project (HMP)

16S rRNA sequencing is being used to characterize the complexity of microbial communities at individual body sites, and to determine whether there is a core microbiome at each site. Several body sites are being studied, including the gastrointestinal and female urogenital tracts, oral cavity, nasal and pharyngeal tract, and skin. This project includes development, pilot-phase and production-phase sub-projects, each linked to their respective data sets of Sanger or second generation (eg. 454) sequences.
Project Type:Umbrella project (Subtype:Funding initiative)
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments1748
Capillary Traces (Trace Archive)1
Other datasets
BioSample87950
Genotype and Phenotype (dbGaP)13
SRA Data Details
ParameterValue
Data volume, Gbases109
Data volume, Tbytes0.20
Human Microbiome Project (HMP) 16S rRNA Gene Diversity encompasses the following 16 sub-projects:
Project TypeNumber of Projects
Targeted Locus (Loci)16
BioProject
accession
OrganismTitle
PRJNA34129human metagenomeHuman Microbiome Project 16S rRNA Sanger Clinical Production Pilot (NIH Human Microbiome Consortium)
PRJNA48333human metagenomeHuman Microbiome Project 16S rRNA 454 Clinical Production Phase I (NIH Human Microbiome Consortium)
PRJNA48335human metagenomeHuman Microbiome Project 16S rRNA Clinical Production Pilot (NIH Human Microbiome Consortium)
PRJNA48339human metagenomeHuman Microbiome Project 16S rRNA 454 Protocol Validation - Clinical (NIH Human Microbiome Consortium)
PRJNA48341human metagenomeHuman Microbiome Project 16S rRNA 454 Protocol Validation - Mock (NIH Human Microbiome Consortium)
List all 16 'Targeted Locus (Loci)' projects...
Submission:
Registration date: 10-May-2010
NIH Human Microbiome Consortium

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