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Accession: PRJNA43017 ID: 43017

Human Microbiome Project (HMP) Metagenome Projects

Deeper shotgun sequencing of human microbiome samples for the Human Microbiome Project (HMP)

Expanding on the 16S rRNA data obtained in another component of the Human Microbiome Project (HMP), whole genome shotgun (WGS) sequencing will be performed on samples taken from the digestive tract, mouth, skin, nose, and female urogenital tract of human subjects to gain insight into the genes and pathways present in the human microbiome.
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Project Type:Umbrella project, Phenotype or Genotype (Subtype:Funding initiative)
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments2894
Other datasets
Genotype and Phenotype (dbGaP)1
SRA Data Details
Data volume, Gbases19,517
Data volume, Tbytes23.05
Human Microbiome Project (HMP) Metagenome Projects encompasses the following 3 sub-projects:
Project TypeNumber of Projects
PRJNA48475human metagenomeHuman Microbiome Project Metagenomes Mock Pilot (NIH Human Microbiome Consortium)
PRJNA48477human metagenomeHuman Microbiome Project Metagenomes Clinical Pilot (NIH Human Microbiome Consortium)
PRJNA48479human metagenomeHuman Microbiome Project Metagenomes Production Phase (NIH Human Microbiome Consortium)
Registration date: 4-Jan-2010
NIH Human Microbiome Consortium

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