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    Accession: PRJNA28331 ID: 28331

    Human Microbiome Project (HMP) Reference Genomes

    Genomes of microorganisms that have been isolated in and on the human body, to be used as Reference Genomes for the Human Microbiome Project (HMP)

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    This project is a component of the NIH Human Microbiome Project (HMP) Roadmap Project
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    3 additional projects are components of the NIH Human Microbiome Project (HMP) Roadmap Project.
    Over 1000 microbes from cultured and uncultured bacteria that have been previously isolated from the human body, plus several non-bacterial microbes, will be sequenced. Combined with existing and other planned efforts, the total reference collection could reach 3000 genomes. These sequences will provide a benchmark for analysis of the sequence data generated in the 16S rRNA Sequencing and Metagenomes components of HMP.
    Project Type:Umbrella project (Subtype:Funding initiative)
    Project Data:
    Resource NameNumber
    of Links
    Sequence data
    Nucleotide (total)166808
    WGS master1193
    Genomic DNA165615
    SRA Experiments2800
    Capillary Traces (Trace Archive)1
    Protein Sequences3479655
    Publications
    PubMed40
    PMC16
    Other datasets
    BioSample1223
    SRA Data Details
    ParameterValue
    Data volume, Gbases1,398
    Data volume, Tbytes1.33
    Human Microbiome Project (HMP) Reference Genomes encompasses the following 1839 sub-projects:
    Project TypeNumber of Projects
    Genome sequencing
    Highest level of assembly :
    Chromosomes
    Scaffolds or contigs
    SRA or Trace
    No data links
    Total

    25
    1176
    251
    385
    1837
    BioProject
    accession    		Assembly
    level    		OrganismTitle
    PRJNA33011 SRA or TraceAbiotrophia defectiva ATCC 49176Abiotrophia defectiva ATCC 49176 (Washington University Genome...)
    PRJNA197021 -Acetanaerobacterium sp. hmp_mda_pilot_jcvi_0106Acetanaerobacterium sp. hmp_mda_pilot_jcvi_0106 (Broad Institute)
    PRJNA197022 -Acetanaerobacterium sp. hmp_mda_pilot_jcvi_0107Acetanaerobacterium sp. hmp_mda_pilot_jcvi_0107 (Broad Institute)
    PRJNA197024 -Acetanaerobacterium sp. hmp_mda_pilot_jcvi_0109Acetanaerobacterium sp. hmp_mda_pilot_jcvi_0109 (Broad Institute)
    PRJNA70153 Scaffolds or contigsAcetobacteraceae bacterium AT-5844Acetobacteraceae bacterium AT-5844 (Washington University Genome...)
    List all 1837 'Genome sequencing' projects...
    Other1
    BioProject
    accession    		NameTitle
    PRJNA73477Human Microbiome Project (HMP) Viral and Phage Reference GenomesHuman Microbiome Project (HMP) Viral and Phage Reference Genomes (NIH Human Microbiome Consortium)
    Transcriptome or Gene expression1
    BioProject
    accession    		OrganismTitle
    PRJNA72979Exophiala dermatitidis NIH/UT8656Exophiala dermatitidis NIH/UT8656 (Broad Institute)
    Publications:
    Submission:
    Registration date: 10-Jan-2008
    NIH Human Microbiome Consortium

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      • Human Microbiome Project (HMP) Reference Genomes
        Human Microbiome Project (HMP) Reference Genomes
        Genomes of microorganisms that have been isolated in and on the human body, to be used as Reference Genomes for the Human Microbiome Project (HMP)
        BioProject

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