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Accession: PRJNA28331 ID: 28331

Human Microbiome Project (HMP) Reference Genomes

Genomes of microorganisms that have been isolated in and on the human body, to be used as Reference Genomes for the Human Microbiome Project (HMP)

Over 1000 microbes from cultured and uncultured bacteria that have been previously isolated from the human body, plus several non-bacterial microbes, will be sequenced. Combined with existing and other planned efforts, the total reference collection could reach 3000 genomes. These sequences will provide a benchmark for analysis of the sequence data generated in the 16S rRNA Sequencing and Metagenomes components of HMP.
Related Resources:
Project Type:Umbrella project (Subtype:Funding initiative)
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)222781
WGS master1479
Genomic DNA63
Transcript11108
Map3
SRA Experiments3668
Capillary Traces (Trace Archive)1
Protein Sequences4352009
Publications
PubMed42
PMC20
Other datasets
BioSample2626
SRA Data Details
ParameterValue
Data volume, Gbases2,269
Data volume, Tbytes1.85
Human Microbiome Project (HMP) Reference Genomes encompasses the following 2273 sub-projects:
Project TypeNumber of Projects
Genome sequencing

30
1468
451
322
2271
BioProject
accession
Assembly
level
NameTitle
PRJNA33011 Scaffolds or contigsAbiotrophia defectiva ATCC 49176Abiotrophia defectiva ATCC 49176 (Washington University Genome...)
PRJNA197021 SRA or TraceAcetanaerobacterium sp. hmp_mda_pilot_jcvi_0106Acetanaerobacterium sp. hmp_mda_pilot_jcvi_0106 (Broad Institute)
PRJNA197022 SRA or TraceAcetanaerobacterium sp. hmp_mda_pilot_jcvi_0107Acetanaerobacterium sp. hmp_mda_pilot_jcvi_0107 (Broad Institute)
PRJNA197024 SRA or TraceAcetanaerobacterium sp. hmp_mda_pilot_jcvi_0109Acetanaerobacterium sp. hmp_mda_pilot_jcvi_0109 (Broad Institute)
PRJNA70153 Scaffolds or contigsAcetobacteraceae bacterium AT-5844Acetobacteraceae bacterium AT-5844 (Washington University Genome...)
List all 2271 'Genome sequencing' projects...
RefSeq Genome
Highest level of assembly :
Scaffolds or contigs

1
BioProject
accession
Assembly
level
OrganismTitle
PRJNA245131 Scaffolds or contigsCyphellophora europaea CBS 101466Cyphellophora europaea CBS 101466 (NCBI)
Transcriptome or Gene expression1
BioProject
accession
OrganismTitle
PRJNA72979Exophiala dermatitidis NIH/UT8656Exophiala dermatitidis NIH/UT8656 (Broad Institute)
Publications:
Submission:
Registration date: 10-Jan-2008
NIH Human Microbiome Consortium

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  • Human Microbiome Project (HMP) Reference Genomes
    Human Microbiome Project (HMP) Reference Genomes
    Genomes of microorganisms that have been isolated in and on the human body, to be used as Reference Genomes for the Human Microbiome Project (HMP)
    BioProject

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