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Accession: PRJNA28331 ID: 28331

Human Microbiome Project (HMP) Reference Genomes

Genomes of microorganisms that have been isolated in and on the human body, to be used as Reference Genomes for the Human Microbiome Project (HMP)

Over 1000 microbes from cultured and uncultured bacteria that have been previously isolated from the human body, plus several non-bacterial microbes, will be sequenced. Combined with existing and other planned efforts, the total reference collection could reach 3000 genomes. These sequences will provide a benchmark for analysis of the sequence data generated in the 16S rRNA Sequencing and Metagenomes components of HMP.
Related Resources:
Project Type:Umbrella project, Genome sequencing, Transcriptome or Gene expression (Subtype:Funding initiative)
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)216921
WGS master1512
Genomic DNA319
Map3
SRA Experiments3774
Capillary Traces (Trace Archive)1
Protein Sequences4412619
Publications
PubMed44
PMC22
Other datasets
BioSample2730
Assembly1633
SRA Data Details
ParameterValue
Data volume, Gbases2,356
Data volume, Tbytes1.91
Human Microbiome Project (HMP) Reference Genomes encompasses the following 2436 sub-projects:
Project TypeNumber of Projects
Genome sequencing

31
1495
520
319
2365
BioProject
accession
Assembly
level
NameTitle
PRJNA33011 Scaffolds or contigsAbiotrophia defectiva ATCC 49176Reference genome for the Human Microbiome Project (Washington University Genome...)
PRJNA269830 -Abiotrophia sp. HMSC24B09HMP reference genome (The Genome Institute at Washington...)
PRJNA197021 SRA or TraceAcetanaerobacterium sp. hmp_mda_pilot_jcvi_0106HMP reference genome (Broad Institute)
PRJNA197022 SRA or TraceAcetanaerobacterium sp. hmp_mda_pilot_jcvi_0107HMP reference genome (Broad Institute)
PRJNA197024 SRA or TraceAcetanaerobacterium sp. hmp_mda_pilot_jcvi_0109HMP reference genome (Broad Institute)
List all 2365 'Genome sequencing' projects...
Genome sequencing and assembly70
BioProject
accession
OrganismTitle
PRJNA274539Achromobacter sp. HMSC63C10HMP reference genome (The Genome Institute at Washington...)
PRJNA274505Acinetobacter sp. HMSC34A05HMP reference genome (The Genome Institute at Washington...)
PRJNA274562Bacillus sp. HMSC76G11HMP reference genome (The Genome Institute at Washington...)
PRJNA274537Bacteroides sp. HMSC62D01HMP reference genome (The Genome Institute at Washington...)
PRJNA205838Enterococcus faecalis 918Human Microbiome Project (HMP) Reference Genomes (Washington University)
List all 70 'Genome sequencing and assembly' projects...
Transcriptome or Gene expression1
BioProject
accession
OrganismTitle
PRJNA72979Exophiala dermatitidis NIH/UT8656Reference transcriptome for Human Microbiome Project (Broad Institute)
Publications:
Submission:
Registration date: 10-Jan-2008
NIH Human Microbiome Consortium

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  • Human Microbiome Project (HMP) Reference Genomes
    Human Microbiome Project (HMP) Reference Genomes
    Genomes of microorganisms that have been isolated in and on the human body, to be used as Reference Genomes for the Human Microbiome Project (HMP)
    BioProject

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