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Accession: PRJNA193500 ID: 193500

Studying UTI Defensins

See Genome Information for Escherichia coli
NIAID-funded study to compare E. coli strains known to cause urinary tract infection (UTI) with similar isolates from human subjects who have never experienced UTI. The aim is to identify UTI-specific genes and allelic variation that can contribute to UTI.
AccessionPRJNA193500
TypeGenome sequencing, Umbrella Comparative genomics project (Subtype:Comparative genomics)
OrganismEscherichia coli[Taxonomy ID: 562]
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia; Escherichia coli
SubmissionRegistration date: 20-Mar-2013
Broad Institute
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RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)17703
WGS master234
SRA Experiments432
Protein Sequences1116609
Other datasets
BioSample237
Assembly230
SRA Data Details
ParameterValue
Data volume, Gbases368
Data volume, Tbytes0.21
This project encompasses the following 237 sub-projects:
Project TypeNumber of Projects
Genome sequencing
Highest level of assembly :
Scaffolds or contigs
SRA or Trace
Total

234
2
236
BioProject
accession
Assembly
level
OrganismTitle
PRJNA157563 Scaffolds or contigsCitrobacter sp. KTE151Citrobacter sp. KTE151 Raw sequence reads (Broad Institute)
PRJNA157557 Scaffolds or contigsCitrobacter sp. KTE30Citrobacter sp. KTE30 Raw sequence reads (Broad Institute)
PRJNA157619 Scaffolds or contigsCitrobacter sp. KTE32Citrobacter sp. KTE32 Raw sequence reads (Broad Institute)
PRJNA157549 Scaffolds or contigsEscherichia coli KTE1Escherichia coli KTE1 Raw sequence reads (Broad Institute)
PRJNA157579 Scaffolds or contigsEscherichia coli KTE10Escherichia coli KTE10 Raw sequence reads (Broad Institute)
List all 236 'Genome sequencing' projects...
Other1
BioProject
accession
NameTitle
PRJNA157073UTI DefensinsUTI Defensins (Broad Institute)

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