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Accession: PRJNA183844 ID: 183844

Food and Drug Administration, Center for Food Safety and Applied Nutrition: GenomeTrakr Project

Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses. Whole genome sequencing of cultured Salmonella as part of the US Food and Drug Administration surveillance project for the rapid detection of outbreaks of foodborne illnesses.
Related Resources:
Project Type:Umbrella project (Subtype:Disease)
Relevance:Agricultural, Medical, Industrial, Environmental
Keyword:GMI
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)1646
WGS master35
SRA Experiments10924
Protein Sequences152517
Publications
PubMed1
Other datasets
BioSample15677
Assembly35
SRA Data Details
ParameterValue
Data volume, Gbases4,829
Data volume, Tbytes3.00
Food and Drug Administration, Center for Food Safety and Applied Nutrition: GenomeTrakr Project encompasses the following 20 sub-projects:
Project TypeNumber of Projects
Genome sequencing

1
13
4
18
BioProject
accession
Assembly
level
OrganismTitle
PRJNA183851 SRA or TraceSalmonella entericaGenomeTrakr Project: Washington State Department of Health Public Health Laboratory (Washington State Department...)
PRJNA183850 SRA or TraceSalmonella entericaGenomeTrakr Project: NY State Dept. of Health, Wadsworth Center (New York State Dept. of Health...)
PRJNA186035 Scaffolds or contigsSalmonella entericaGenomeTrakr Project: US Food and Drug Administration (Center for Food Safety and...)
PRJNA215333 SRA or TraceSalmonella entericaGenomeTrakr Project: Minnesota Department of Health (FDA/CFSAN)
PRJNA217342 SRA or TraceSalmonella entericaGenomeTrakr Project: Mexico (FDA/CFSAN)
List all 18 'Genome sequencing' projects...
Raw sequence reads2
BioProject
accession
OrganismTitle
PRJNA183848Salmonella entericaGenomeTrakr Project: Florida Department of Health (Florida Department of Health)
PRJNA183847Salmonella entericaGenomeTrakr Project: Arizona State Public Health Laboratory (Arizona State Public Health...)
Publications:
Submission:
Registration date: 13-Dec-2012
Center for Food Safety and Applied Nutrition

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