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    Accession: PRJNA17973 ID: 17973

    Populus trichocarpa (black cottonwood)

    Fast growing tree being used as a model for molecular tree biology, first forest tree to be sequenced

    See Genome Information for Populus trichocarpa
    Navigate Across
    20 additional projects are related by organism.
    The poplar reference sequence (Refseq) genome is provided by NCBI using WGS sequence and assembly instructions provided by the Joint Genome Institute.

    For additional information, please see the RefSeq Project chapter in the NCBI Handbook.

    Project Data Type:RefSeq Genome
    Attributes:Scope: Monoisolate; Material: Genome; Capture: Whole; Method type: Other
    Project Data:
    Resource NameNumber
    of Links
    Sequence data
    Nucleotide (total)61068
    WGS master1
    Genomic DNA20644
    Transcript40423
    Protein Sequences40521
    Publications
    PubMed1
    Genome assemblies, organelles and plasmids:
    Assembly GCF_000002775.1 :
    NameRefSeqGenBank
    Linkage group LGINC_008467.1CM000337.1
    Linkage group LGIIINC_008469.1CM000339.1
    Linkage group LGIVNC_008470.1CM000340.1
    Linkage group LGVNC_008471.1CM000341.1
    Linkage group LGVINC_008472.1CM000342.1
    Linkage group LGVIINC_008473.1CM000343.1
    Linkage group LGVIIINC_008474.1CM000344.1
    Linkage group LGIXNC_008475.1CM000345.1
    Linkage group LGXIINC_008478.1CM000348.1
    Linkage group LGXIIINC_008479.1CM000349.1
    Linkage group LGXIVNC_008480.1CM000350.1
    Linkage group LGXVNC_008481.1CM000351.1
    Linkage group LGXVIINC_008483.1CM000353.1
    Linkage group LGXIXNC_008485.1CM000355.1
    PltdNC_009143.1EF489041.1
    Assembly GCF_000002775.2 :
    NameRefSeqGenBank
    Linkage group LGIINC_008468.1CM000338.1
    Linkage group LGXNC_008476.1CM000346.1
    Linkage group LGXINC_008477.1CM000347.1
    Linkage group LGXVINC_008482.1CM000352.1
    Linkage group LGXVIIINC_008484.1CM000354.1
    Whole Genome Shotgun AssemblyNZ_AARH00000000AARH00000000
    Related GenBank Project
    PRJNA10772 : Populus trichocarpa
    Publications:
    • Tuskan GA et al., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).", Science, 2006 Sep 15;313(5793):1596-604
    Lineage:Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus; Populus trichocarpa[Taxonomy ID: 3694]
    Submission:
    Registration date: 9-Oct-2006
    NCBI, based on data from:
    - US DOE Joint Genome Institute (JGI
    - DOE Joint Genome Institute

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