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Cavpor3.0

Organism name:
Cavia porcellus (domestic guinea pig)
Infraspecific name:
Strain: inbred line 2N
Sex:
female
BioSample:
SAMN02981223
Submitter:
The Genome Sequencing Platform, The Genome Assembly Team
Date:
2008/03/03
Synonyms:
cavPor3
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000151735.1 (latest)
RefSeq assembly accession:
GCF_000151735.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT.
  • Data displayed for RefSeq version
WGS Project:
AAKN02
Assembly method:
unknown v. before 2008
Genome coverage:
6.8x
Sequencing technology:
Sanger

IDs: 304568 [UID] 175118 [GenBank] 304568 [RefSeq]

See Genome Information for Cavia porcellus

History (Show revision history)

Comment

This version of the project, Cavpor3.0, represents 6.8x coverage of the genome

Global statistics

Total sequence length2,723,219,641
Total assembly gap length59,849,908
Gaps between scaffolds0
Number of scaffolds3,144
Scaffold N5027,942,054
Scaffold L5028
Number of contigs61,604
Contig N5080,583
Contig L509,305
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,723,202,8403,1432,663,352,93227,942,05458,4600
MoleculeTotal
Length
Mitochondrion MT16,801