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V1.0

Organism name:
Daphnia pulex (common water flea)
BioSample:
SAMN02744063
Submitter:
US DOE Joint Genome Institute (JGI-PGF)
Date:
2011/02/04
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000187875.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
ACJG01
Assembly method:
JAZZ v. 1.0 (4/11/2006)
Genome coverage:
8.7x
Sequencing technology:
Sanger

IDs: 244278 [UID] 244278 [GenBank]

See Genome Information for Daphnia pulex

History (Show revision history)

Comment

URL -- http://genome.jgi-psf.org/Daphnia
JGI Project ID: 3635095
The DNA and live culture are available from John K. Colbourne (jcolbour@cgb.indiana.edu)
Kelley Thomas (kelley.thomas@unh.edu) has archived the arrayed gDNA libraries that were sequenced.
Contacts: John K. Colbourne (jcolbour@cgb.indiana.edu)
 Igor V. Grigoriev (ivgrigoriev@lbl.gov)
Assembly and annotation done ... by JGI and the Daphnia user community.  more

Global statistics

Total sequence length197,206,209
Total assembly gap length38,596,743
Gaps between scaffolds0
Number of scaffolds5,186
Scaffold N50642,089
Scaffold L5075
Number of contigs18,989
Contig N5049,250
Contig L50831
Total number of chromosomes and plasmids0

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced197,206,2095,186158,609,466642,08913,8030