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WGSA

Description:
The December 2001 whole genome shotgun assembly (WGSA), released to the public sequence databases in 2004
Organism name:
Homo sapiens
BioSample:
SAMN02981219
Submitter:
Celera Genomics
Date:
2004/02/25
Assembly level:
Chromosome
Genome representation:
full
GenBank Assembly ID:
GCA_000002115.2 (latest)
RefSeq Assembly ID:
n/a
RefSeq Assembly and GenBank Assembly Identical:
n/a
WGS Project:
AADD01

IDs: 700758 [UID] 700758 [GenBank]

See Genome Information for Homo sapiens

There are 13 assemblies for this organism

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History (Show revision history)

Comment

This is the December 2001 whole genome shotgun assembly (WGSA) of the human genome. It was generated by the Celera Assembler applied to shotgun data only: the 27 million reads of Celera's 5.3X whole genome shotgun data and 104,000 ... BAC end sequence pairs from GenBank from other human genome projects (Nature 1996. 381:364-366; Genomics 2000. 63:321-332). It relied on Celera's paired reads and the BAC end reads for long range order and orientation. Its scaffolds were mapped to chromosomes using STS maps. more

Global statistics

Total sequence length2,863,645,671
Total assembly gap length168,030,791
Gaps between scaffolds382
Number of scaffolds4,940
Scaffold N5029,133,171
Number of contigs211,493
Contig N5023,350
Total number of chromosomes and plasmids24

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Assembly Unit: Primary Assembly (GCA_000000015.2)
Molecule nameGenBank IDRefSeq IDUnlocalized
sequences count
Chromosome 1CH003448.1n/an/a0
Chromosome 2CH003449.1n/an/a0
Chromosome 3CH003450.1n/an/a0
Chromosome 4CH003451.1n/an/a0
Chromosome 5CH003452.1n/an/a0
Chromosome 6CH003453.1n/an/a0
Chromosome 7CH003454.1n/an/a0
Chromosome 8CH003455.1n/an/a0
Chromosome 9CH003456.1n/an/a0
Chromosome 10CH003457.1n/an/a0
Chromosome 11CH003458.1n/an/a0
Chromosome 12CH003459.1n/an/a0
Chromosome 13CH003460.1n/an/a0
Chromosome 14CH003461.1n/an/a0
Chromosome 15CH003462.1n/an/a0
Chromosome 16CH003463.1n/an/a0
Chromosome 17CH003464.1n/an/a0
Chromosome 18CH003465.1n/an/a0
Chromosome 19CH003466.1n/an/a0
Chromosome 20CH003467.1n/an/a0
Chromosome 21CH003468.1n/an/a0
Chromosome 22CH003469.1n/an/a0
Chromosome XCH003470.1n/an/a0
Chromosome YCH003471.1n/an/a0
unplacedn/an/an/a4,534

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Chromosome 1221,336,26336209,662,50320,166,49614,67635
Chromosome 2234,033,21726223,960,45659,901,69814,86225
Chromosome 3196,156,48412189,481,82834,722,32712,66311
Chromosome 4187,991,47011180,981,69957,766,17912,81410
Chromosome 5177,800,00020170,281,26626,611,02411,33619
Chromosome 6168,195,39216161,428,33026,264,73111,03915
Chromosome 7154,169,60935144,247,90812,730,52610,64134
Chromosome 8141,588,9707136,878,55439,617,6208,8636
Chromosome 9109,101,13811104,630,16525,840,9707,13410
Chromosome 10128,545,78314122,948,63532,794,7518,03613
Chromosome 11131,853,17913126,253,17635,009,3588,42012
Chromosome 12131,157,4198125,900,47679,898,9758,9407
Chromosome 1395,590,859592,484,20628,028,5666,1344
Chromosome 1487,839,096984,198,82151,587,3435,7968
Chromosome 1578,460,7511874,059,97016,598,4894,71117
Chromosome 1671,618,3882066,369,06813,570,6044,81419
Chromosome 1780,652,5892773,627,62815,333,3265,89226
Chromosome 1873,722,353471,253,21526,014,4114,6193
Chromosome 1956,718,4911351,679,11010,096,3445,54112
Chromosome 2059,663,740457,238,06933,091,1283,7533
Chromosome 2132,842,498231,584,73632,722,3022,1701
Chromosome 2234,001,133931,357,60529,133,1712,3918
Chromosome X150,422,32456121,809,1447,000,06925,97155
Chromosome Y12,617,817307,151,840878,5851,06329
unplaced47,566,7084,53436,146,47226,1404,2740
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