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ASM18296v2

Organism name:
Candida albicans SC5314
Infraspecific name:
Strain: SC5314
BioSample:
SAMN02953594
Submitter:
Stanford University
Date:
2004/04/21
Assembly type:
haploid-with-alt-loci
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative-genome
GenBank Assembly ID:
GCA_000182965.2 (latest)
RefSeq Assembly ID:
GCF_000182965.2 (latest)
RefSeq Assembly and GenBank Assembly Identical:
yes
WGS Project:
AACQ01

IDs: 557828 [UID] 557258 [GenBank] 557828 [RefSeq]

See Genome Information for Candida albicans

There are 13 assemblies for this organism

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History (Show revision history)

Comment

We developed computational methods to reconstruct the diploid genome sequence, using phrap contigs as a starting point. The genome sequence obtained by these methods is much less fragmented than the original phrap assembly, and is in good agreement with ... available physical mapping data. It differs in various respects from other genome sequences in that both copies of the genome are explicitly represented.
Many of the contigs occur in homologous pairs. The DNA sequence of paired homologous contigs is usually similar throughout, although in certain regions, such as the mating-type locus, divergence between the homologs is considerable. Paired homologous contigs have numbers differing by 10000; for example, contigs 10065 and 20065 form a homologous pair. In addition, some contigs do not have homologous partners. Such contigs appear to contain either homozygous sequence, or in a few cases, repeat sequences that occur in multiple locations in the genome. All contigs with numbers less than 10000 are unpaired. In addition, contig 10262 is unpaired.
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Global statistics

Total sequence length27,558,918
Total assembly gap length0
Number of contigs413
Contig N50136,025
Total number of chromosomes and plasmids8

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Alternate Haplotype
Assembly Unit: Primary Assembly (GCF_000182975.2)
Molecule nameGenBank IDRefSeq IDUnlocalized
sequences count
Chromosome 1n/an/an/a26
Chromosome 2n/an/an/a18
Chromosome 3n/an/an/a10
Chromosome 4n/an/an/a15
Chromosome 5n/an/an/a10
Chromosome 6n/an/an/a12
Chromosome 7n/an/an/a8
Chromosome Rn/an/an/a22
unplacedn/an/an/a146

Assembly statistics

MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Chromosome 1AllAssembled moleculeUnlocalized scaffolds3,034,02103,034,021260263,034,02103,034,021166,3870166,387000000
Chromosome 2AllAssembled moleculeUnlocalized scaffolds1,989,38101,989,381180181,989,38101,989,381123,7200123,720000000
Chromosome 3AllAssembled moleculeUnlocalized scaffolds1,666,25601,666,256100101,666,25601,666,256236,5080236,508000000
Chromosome 4AllAssembled moleculeUnlocalized scaffolds1,485,20801,485,208150151,485,20801,485,208132,0300132,030000000
Chromosome 5AllAssembled moleculeUnlocalized scaffolds1,081,22401,081,224100101,081,22401,081,224136,7870136,787000000
Chromosome 6AllAssembled moleculeUnlocalized scaffolds901,7160901,71612012901,7160901,716136,0250136,025000000
Chromosome 7AllAssembled moleculeUnlocalized scaffolds949,8370949,837808949,8370949,837244,0730244,073000000
Chromosome RAllAssembled moleculeUnlocalized scaffolds1,743,41101,743,411220221,743,41101,743,411126,2490126,249000000
unplacedAssembled molecule2,012,4981462,012,49833,48600
Unit NameScaffold
Count
Total
Length
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Alternate Haplotype14612,695,36612,695,366137,6910
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