Display Settings:

Format

Send to:

Choose Destination
We are sorry, but NCBI web applications do not support your browser and may not function properly. More information

GRCh37.p9

Description:
Genome Reference Consortium Human Build 37 patch release 9 (GRCh37.p9)
Organism name:
Homo sapiens
Submitter:
Genome Reference Consortium
Date:
2012/07/09
Assembly type:
haploid-with-alt-loci
Release type:
patch
Assembly level:
Chromosome
Genome representation:
full
GenBank Assembly ID:
GCA_000001405.10 (replaced)
RefSeq Assembly ID:
GCF_000001405.21 (replaced)
RefSeq Assembly and GenBank Assembly Identical:
yes

IDs: 397958 [UID] 397208 [GenBank] 397958 [RefSeq]

See Genome Information for Homo sapiens

There are 13 assemblies for this organism

See more

History (Show revision history)

Global statistics

Number of regions with alternate loci or patches140
Total sequence length3,195,751,584
Total assembly gap length243,096,649
Gaps between scaffolds271
Number of scaffolds411
Scaffold N5044,983,201
Number of contigs640
Contig N5038,116,554
Total number of chromosomes and plasmids25

Supplemental Content

PubMed articles for this assembly

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
ALT_REF_LOCI_1
ALT_REF_LOCI_2
ALT_REF_LOCI_3
ALT_REF_LOCI_4
ALT_REF_LOCI_5
ALT_REF_LOCI_6
ALT_REF_LOCI_7
ALT_REF_LOCI_8
ALT_REF_LOCI_9
PATCHES
non-nuclear

Regions

NameLocation
REGION601:31872759-32017063
1P111:120471050-121346350
1Q211:143871003-150440213
REGION21:153673007-153838214
MTX11:155180173-155275036
REGION31:198339213-198694304
1Q321:206072708-206940869
REGION11:248865779-249098883
REGION42:36453102-36590458
REGION552:95326172-95618108
REGION442:149790583-149880633
SPC252:169686873-169793704
REGION542:243059660-243189373
REGION733:11856742-12027971
SEMA3B3:50267585-50368277
VPRBP3:51416109-51584055
DNAH123:57369478-57399969
REGION643:60558332-60952039
SLC25A263:66270271-66308065
REGION53:151307154-151477286
REGION64:34519577-34885480
LPHN34:62777687-62877254
UGT2B174:69170077-69878175
REGION454:75382210-75689879
REGION74:156756530-156908416
REGION564:190828226-191044276
REGION95:12681538-12744122
REGION615:29036605-29254576
SMA5:68512646-70910270
MCTP15:94505561-94590195
PPIP5K25:102420838-102687150
REGION85:161800673-161968654
MHC6:28477797-33448354
REGION106:80059725-80156628
LAMA46:112323682-112586593
REGION487:56835596-57190579
REGION467:57342227-57586048
WILLIAMS7:71935722-75921852
REGION477:98260131-98556215
SH2B27:101718951-102072447
COPG27:129984424-130721755
REGION117:141333209-141446383
TRB7:141557850-142778624
REGION628:1965390-2498608
JRK8:143711229-143813536
EPPK1_SPATC18:144743526-145146062
SCXB8:145285645-145659901
REGION149:7428994-7577169
CBWD39:70835469-71130847
REGION139:72028659-72092013
MAMDC29:72639029-72804234
REGION159:90793962-90842895
ABO9:136049442-136369192
REGION129:139136890-139252828
REGION5710:60001-224405
AKR1CL110:5012527-5450243
FAM23A_MRC110:17613209-18252930
REGION1610:27574584-27706537
REGION1810:45670681-45964419
10Q1110:46224334-51664310
ZNF518A10:97861451-98039369
PNLIPRP210:118348517-118544777
REGION1710:133258319-133381404
SPON111:13963464-14425744
CALCA11:14873971-15041407
REGION1911:25191953-25340626
REGION4911:49862648-50121284
OLFACTORY_REGION_111:55956728-56641043
REGION6311:69614786-69922571
B3GNT611:76709408-76900812
CWC15_SRSF811:94611846-94852618
MMP1211:102702497-102822936
DIXDC1_ALG911:111618733-111945380
NCAM111:112687997-113234431
TREH11:118245278-118653701
SLC37A411:118849111-118957986
REGION5012:60001-282464
EMG112:6907581-7178849
REGION5812:10953894-11330216
REGION2112:28148967-28263711
REGION2212:58326520-58486538
REGION2312:59323046-59454651
REGION2412:101505377-101652073
REGION2012:126711744-126890020
GALNT912:132806993-132967794
REGION5113:115085142-115109878
REGION2515:28557187-28842093
MEGF1115:66200521-66577156
SYNM15:99529037-99696045
REGION2616:55822434-56002460
REGION7416:57774022-57871358
SNTB216:69174054-69258593
RPH3AL17:1-252428
FAM101B17:252429-296626
REGION2717:21250948-21566608
SLC46A117:26645159-26840019
MYO1917:34442621-35005379
SOCS717:36372617-36711255
KRTAP_REGION_117:39006985-39589187
TTC2517:39869611-40277911
MAPT17:43384864-44913631
PECAM117:62273514-62649312
REGION6517:65936106-66324470
REGION2817:68302419-68520360
REGION3017:75216812-75295408
REGION6917:77412077-77766016
BAHCC117:79319163-79498447
REGION3118:47818564-48101162
REGION3218:49189306-49348012
REGION3318:65090960-65219788
REGION3418:70600357-70692016
REGION3518:76253467-76412030
REGION3618:76694886-76848997
REGION6619:8634915-8926179
REGION5219:20193557-20845946
ZNF6619:20845947-21225187
REGION3719:21831092-21991834
REGION3919:22303652-22483468
REGION3819:34643165-34791855
LRC19:54528888-55595686
REGION4020:17751747-17874115
DLGAP420:34883261-34994224
REGION5320:61031539-61267733
REGION4121:15796462-15847792
REGION4221:23474793-23669288
REGION4321:34141390-34210247
TMEM50B21:34777735-34884866
CLTCL122:19134297-19346604
APOBEC22:39280299-39407165
CYP2D622:42477964-42648568
PAR#1X:60001-2699520
REGION59X:803878-1227822
REGION75X:36202464-37669766
DGKKX:50036540-50285784
REGION76X:75200416-77130133
TEX13AX:104423968-104489003
REGION67X:152828210-152898056
PAR#2X:154931044-155260560
PAR#1Y:10001-2649520
PAR#2Y:59034050-59363566
Assembly Unit: Primary Assembly (GCF_000001305.13)
Molecule nameGenBank IDRefSeq IDUnlocalized
sequences count
Chromosome 1CM000663.1=NC_000001.102
Chromosome 2CM000664.1=NC_000002.110
Chromosome 3CM000665.1=NC_000003.110
Chromosome 4CM000666.1=NC_000004.112
Chromosome 5CM000667.1=NC_000005.90
Chromosome 6CM000668.1=NC_000006.110
Chromosome 7CM000669.1=NC_000007.131
Chromosome 8CM000670.1=NC_000008.102
Chromosome 9CM000671.1=NC_000009.114
Chromosome 10CM000672.1=NC_000010.100
Chromosome 11CM000673.1=NC_000011.91
Chromosome 12CM000674.1=NC_000012.110
Chromosome 13CM000675.1=NC_000013.100
Chromosome 14CM000676.1=NC_000014.80
Chromosome 15CM000677.1=NC_000015.90
Chromosome 16CM000678.1=NC_000016.90
Chromosome 17CM000679.1=NC_000017.104
Chromosome 18CM000680.1=NC_000018.91
Chromosome 19CM000681.1=NC_000019.92
Chromosome 20CM000682.1=NC_000020.100
Chromosome 21CM000683.1=NC_000021.81
Chromosome 22CM000684.1=NC_000022.100
Chromosome XCM000685.1=NC_000023.100
Chromosome YCM000686.1=NC_000024.90
unplacedn/an/an/a39

Assembly statistics

MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Chromosome 1AllAssembled moleculeUnlocalized scaffolds249,904,550249,250,621653,92921192225,934,550225,280,621653,92957,411,34957,411,349547,4961919022220
Chromosome 2Assembled molecule243,199,37313238,204,52268,452,323615
Chromosome 3Assembled molecule198,022,4304194,797,140100,537,10707
Chromosome 4AllAssembled moleculeUnlocalized scaffolds191,535,534191,154,276381,25812102188,042,934187,661,676381,258115,591,997115,591,997191,46911012120
Chromosome 5Assembled molecule180,915,2605177,695,26046,395,64116
Chromosome 6Assembled molecule171,115,0673167,395,06758,720,16668
Chromosome 7AllAssembled moleculeUnlocalized scaffolds159,321,559159,138,663182,896871155,536,559155,353,663182,89650,360,63150,360,631182,896990880
Chromosome 8AllAssembled moleculeUnlocalized scaffolds146,440,111146,364,02276,089972142,964,911142,888,92275,98938,440,85238,440,85238,914211990
Chromosome 9AllAssembled moleculeUnlocalized scaffolds141,696,573141,213,431483,14228244120,626,573120,143,431483,14262,237,59262,237,592169,8741615129290
Chromosome 10Assembled molecule135,534,7478131,314,74779,420,533812
Chromosome 11AllAssembled moleculeUnlocalized scaffolds135,046,619135,006,51640,103541131,169,619131,129,51640,10341,593,37941,593,37940,10344011110
Chromosome 12Assembled molecule133,851,8956130,481,29571,516,77658
Chromosome 13Assembled molecule115,169,878595,589,87867,740,324010
Chromosome 14Assembled molecule107,349,540188,287,49088,289,540245
Chromosome 15Assembled molecule102,531,392781,694,76953,620,202210
Chromosome 16Assembled molecule90,354,753478,884,75342,003,582110
Chromosome 17AllAssembled moleculeUnlocalized scaffolds81,529,60781,195,210334,397106478,129,60777,795,210334,39744,983,20144,983,201174,588220550
Chromosome 18AllAssembled moleculeUnlocalized scaffolds78,081,51078,077,2484,26243174,661,51074,657,2484,26225,808,11225,808,1124,262220770
Chromosome 19AllAssembled moleculeUnlocalized scaffolds59,380,84159,128,983251,85864256,060,84155,808,983251,85831,387,20131,387,201159,169110880
Chromosome 20Assembled molecule63,025,520459,505,52031,409,46129
Chromosome 21AllAssembled moleculeUnlocalized scaffolds48,157,57748,129,89527,68298135,134,22435,106,64227,58228,617,43028,617,43027,68298114140
Chromosome 22Assembled molecule51,304,566434,894,56629,755,34609
Chromosome XAssembled molecule155,270,56017151,100,56027,775,034521
Chromosome YAssembled molecule59,373,5661725,653,5666,265,435216
unplacedAssembled molecule3,675,142393,675,142164,23900
MoleculeTotal
Length
Mitochondrion MT16,569
Region
Name
LocationScaffold
Count
Total
Length
Ungapped
Length
Scaffold
N50
Spanned
Gaps
REGION601:31872759-320170631151,551151,551151,5510
1P111:120471050-12134635011,447,0171,397,0171,447,0171
1Q211:143871003-15044021317,107,8657,007,8657,107,8652
REGION21:153673007-1538382141182,439182,439182,4390
MTX11:155180173-1552750361110,268110,268110,2680
REGION31:198339213-1986943041366,579366,579366,5790
1Q321:206072708-2069408691758,378758,378758,3780
REGION11:248865779-249098883298,66898,66849,3520
REGION42:36453102-365904581143,390143,390143,3900
REGION552:95326172-956181081389,939389,939389,9390
REGION442:149790583-149880633196,13196,13196,1310
SPC252:169686873-1697937041123,821123,821123,8210
REGION542:243059660-243189373166,02166,02166,0210
REGION733:11856742-120279711173,151173,151173,1510
SEMA3B3:50267585-503682771100,694100,694100,6940
VPRBP3:51416109-515840551171,362171,362171,3620
DNAH123:57369478-57399969178,79378,79378,7930
REGION643:60558332-609520391393,769393,769393,7690
SLC25A263:66270271-66308065165,06365,06365,0630
REGION53:151307154-1514772861180,671180,671180,6710
REGION64:34519577-348854801376,187376,187376,1870
LPHN34:62777687-628772541121,345121,345121,3450
UGT2B174:69170077-698781751590,426590,426590,4260
REGION454:75382210-756898791248,177248,177248,1770
REGION74:156756530-1569084161164,536164,536164,5360
REGION564:190828226-1910442761297,485247,485297,4851
REGION95:12681538-12744122182,72882,72882,7280
REGION615:29036605-292545761226,852226,852226,8520
SMA5:68512646-7091027011,612,9281,512,9281,612,9281
MCTP15:94505561-945901951101,241101,241101,2410
PPIP5K25:102420838-1026871501266,316266,316266,3160
REGION85:161800673-1619686541173,459173,459173,4590
MHC6:28477797-33448354833,285,46427,885,1434,683,26398
REGION106:80059725-801566281124,736124,736124,7360
LAMA46:112323682-1125865931262,912262,912262,9120
REGION487:56835596-571905791354,970354,970354,9700
REGION467:57342227-575860481251,823251,823251,8230
WILLIAMS7:71935722-7592185213,821,7703,821,7703,821,7700
REGION477:98260131-985562151327,774327,774327,7740
SH2B27:101718951-1020724471356,330356,330356,3300
COPG27:129984424-1307217551716,227666,227716,2271
REGION117:141333209-1414463831119,183119,183119,1830
TRB7:141557850-14277862411,284,2841,284,2841,284,2840
REGION628:1965390-24986081608,579608,579608,5790
JRK8:143711229-1438135361102,251102,251102,2510
EPPK1_SPATC18:144743526-1451460621429,806429,806429,8060
SCXB8:145285645-1456599011203,777203,777203,7770
REGION149:7428994-75771691162,988162,988162,9880
CBWD39:70835469-711308471295,379295,379295,3790
REGION139:72028659-72092013171,55171,55171,5510
MAMDC29:72639029-728042341171,286171,286171,2860
REGION159:90793962-90842895160,03260,03260,0320
ABO9:136049442-1363691921330,164330,164330,1640
REGION129:139136890-1392528282111,716111,71662,4350
REGION5710:60001-2244051168,465168,465168,4650
AKR1CL110:5012527-54502431437,946437,946437,9460
FAM23A_MRC110:17613209-182529301392,792392,792392,7920
REGION1610:27574584-277065371179,254179,254179,2540
REGION1810:45670681-459644191309,802309,802309,8020
10Q1110:46224334-5166431012,281,1262,231,1262,281,1261
ZNF518A10:97861451-980393691177,920177,920177,9200
PNLIPRP210:118348517-1185447771196,262196,262196,2620
REGION1710:133258319-1333814041128,378128,378128,3780
SPON111:13963464-144257441462,282462,282462,2820
CALCA11:14873971-150414071167,437167,437167,4370
REGION1911:25191953-253406261154,407154,407154,4070
REGION4911:49862648-501212841321,004321,004321,0040
OLFACTORY_REGION_111:55956728-566410432392,407392,407200,9980
REGION6311:69614786-699225711276,448276,448276,4480
B3GNT611:76709408-769008121191,402191,402191,4020
CWC15_SRSF811:94611846-948526181240,775240,775240,7750
MMP1211:102702497-1028229361120,441120,441120,4410
DIXDC1_ALG911:111618733-1119453801326,647326,647326,6470
NCAM111:112687997-1132344311546,435546,435546,4350
TREH11:118245278-1186537011408,430408,430408,4300
SLC37A411:118849111-1189579861108,875108,875108,8750
REGION5012:60001-2824642330,611330,611167,3130
EMG112:6907581-71788491273,128273,128273,1280
REGION5812:10953894-113302162780,880780,880408,2710
REGION2112:28148967-282637111120,804120,804120,8040
REGION2212:58326520-584865381169,178169,178169,1780
REGION2312:59323046-594546511138,655138,655138,6550
REGION2412:101505377-1016520731152,874152,874152,8740
REGION2012:126711744-1268900201184,319184,319184,3190
GALNT912:132806993-1329677941165,247165,247165,2470
REGION5113:115085142-115109878134,66234,66234,6620
REGION2515:28557187-288420931296,527296,527296,5270
MEGF1115:66200521-665771561388,773388,773388,7730
SYNM15:99529037-996960451170,033170,033170,0330
REGION2616:55822434-560024601192,462192,462192,4620
REGION7416:57774022-57871358197,34597,34597,3450
SNTB216:69174054-69258593189,67289,67289,6720
RPH3AL17:1-2524281270,261270,261270,2610
FAM101B17:252429-296626145,55145,55145,5510
REGION2717:21250948-215666081406,963406,963406,9630
SLC46A117:26645159-268400191194,862194,862194,8620
MYO1917:34442621-350053791534,288534,288534,2880
SOCS717:36372617-367112551338,640338,640338,6400
KRTAP_REGION_117:39006985-395891874569,697569,697133,1510
TTC2517:39869611-402779111412,535412,535412,5350
MAPT17:43384864-4491363122,135,2131,985,2131,680,8283
PECAM117:62273514-626493121457,041457,041457,0410
REGION6517:65936106-663244701388,340388,340388,3400
REGION2817:68302419-685203601223,995223,995223,9950
REGION3017:75216812-75295408190,21990,21990,2190
REGION6917:77412077-777660161376,223376,223376,2230
BAHCC117:79319163-794984471186,059186,059186,0590
REGION3118:47818564-481011621289,831289,831289,8310
REGION3218:49189306-493480121164,789164,789164,7890
REGION3318:65090960-652197881198,278148,278198,2781
REGION3418:70600357-706920161104,552104,552104,5520
REGION3518:76253467-764120301167,950167,950167,9500
REGION3618:76694886-768489971159,547159,547159,5470
REGION6619:8634915-89261791245,473245,473245,4730
REGION5219:20193557-208459461580,393580,393580,3930
ZNF6619:20845947-212251871385,657385,657385,6570
REGION3719:21831092-219918341170,222170,222170,2220
REGION3919:22303652-224834681188,024188,024188,0240
REGION3819:34643165-347918551155,864155,864155,8640
LRC19:54528888-5559568687,726,0274,983,0271,002,68217
REGION4020:17751747-178741151128,385128,385128,3850
DLGAP420:34883261-34994224170,48370,48370,4830
REGION5320:61031539-612677331179,899179,899179,8990
REGION4121:15796462-15847792163,91763,91763,9170
REGION4221:23474793-236692881201,198201,198201,1980
REGION4321:34141390-34210247174,65274,65274,6520
TMEM50B21:34777735-348848661116,690116,690116,6900
CLTCL122:19134297-193466041212,298212,298212,2980
APOBEC22:39280299-39407165196,92496,92496,9240
CYP2D622:42477964-426485681158,507158,507158,5070
REGION59X:803878-12278221284,527284,527284,5270
REGION75X:36202464-3766976621,421,2981,421,298898,9790
DGKKX:50036540-502857841249,246249,246249,2460
REGION76X:75200416-7713013321,893,0861,893,0861,461,1880
TEX13AX:104423968-104489003165,03465,03465,0340
REGION67X:152828210-152898056169,85069,85069,8500
Unit NameScaffold
Count
Total
Length
Ungapped
Length
Scaffold
N50
Spanned
Gaps
ALT_REF_LOCI_114,622,2902,320,7474,622,29028
ALT_REF_LOCI_214,795,3714,795,3714,795,3710
ALT_REF_LOCI_314,610,3964,204,3024,610,39610
ALT_REF_LOCI_414,683,2634,100,7414,683,26316
ALT_REF_LOCI_514,833,3983,794,9114,833,39822
ALT_REF_LOCI_614,611,9844,295,3254,611,9845
ALT_REF_LOCI_714,928,5674,173,5514,928,56717
ALT_REF_LOCI_81590,426590,426590,4260
ALT_REF_LOCI_911,680,8281,580,8281,680,8282
PATCHES15258,590,32255,347,322608,57926
Write to the Help Desk