Display Settings:

Format

Send to:

Choose Destination

Rnor_5.0

Organism name:
Rattus norvegicus
Infraspecific name:
Strain: BN/SsNHsdMCW
BioSample:
SAMN02808218
Submitter:
Rat Genome Sequencing Consortium
Date:
2012/03/16
Synonyms:
rn5
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_000001895.3 (replaced)
RefSeq assembly accession:
GCF_000001895.4 (replaced)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT.
Data displayed for RefSeq version
WGS Project:
AABR06
Assembly method:
Newbler v. 2.0.0-PreRelease-01162009 paired with Phrap v. 0. 990329 for Sanger reads; CLC bio for Solid reads
Genome coverage:
3x BAC; 6x WGS ABI Sanger reads
Sequencing technology:
Sanger; SOLiD

IDs: 382928 [UID] 363128 [GenBank] 382928 [RefSeq]

See Genome Information for Rattus norvegicus

There are 8 assemblies for this organism

See more

History (Show revision history)

Global statistics

Total sequence length2,909,698,938
Total assembly gap length336,599,514
Gaps between scaffolds8,109
Number of scaffolds10,848
Scaffold N502,178,346
Number of contigs132,131
Contig N5052,491
Total number of chromosomes and plasmids22

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_000000225.3)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM000072.4=NC_005100.381
Chromosome 2CM000073.4=NC_005101.3123
Chromosome 3CM000074.4=NC_005102.365
Chromosome 4CM000075.4=NC_005103.378
Chromosome 5CM000076.4=NC_005104.378
Chromosome 6CM000077.4=NC_005105.340
Chromosome 7CM000078.4=NC_005106.399
Chromosome 8CM000079.4=NC_005107.350
Chromosome 9CM000080.4=NC_005108.336
Chromosome 10CM000081.4=NC_005109.347
Chromosome 11CM000082.4=NC_005110.354
Chromosome 12CM000083.4=NC_005111.335
Chromosome 13CM000084.4=NC_005112.350
Chromosome 14CM000085.4=NC_005113.341
Chromosome 15CM000086.4=NC_005114.382
Chromosome 16CM000087.4=NC_005115.343
Chromosome 17CM000088.4=NC_005116.345
Chromosome 18CM000089.4=NC_005117.334
Chromosome 19CM000090.4=NC_005118.322
Chromosome 20CM000091.4=NC_005119.334
Chromosome XCM000092.4=NC_005120.3141
unplacedn/an/an/a1,439

Assembly statistics

MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Chromosome 1AllAssembled moleculeUnlocalized scaffolds290,468,227290,094,216374,0111,1181,03781267,440,939267,155,535285,4042,129,2952,129,29513,89010,29210,270221,0361,0360
Chromosome 2AllAssembled moleculeUnlocalized scaffolds285,436,618285,068,071368,547867744123244,794,732244,493,858300,8741,955,9001,955,9003,5399,7799,751287437430
Chromosome 3AllAssembled moleculeUnlocalized scaffolds184,002,104183,740,530261,57457150665167,164,072167,003,807160,2652,587,7972,587,7975,5456,1636,132315055050
Chromosome 4AllAssembled moleculeUnlocalized scaffolds248,824,638248,343,840480,79853846078172,595,133172,185,384409,7492,395,7322,395,73243,0515,6185,606124594590
Chromosome 5AllAssembled moleculeUnlocalized scaffolds177,410,427177,180,328230,09953045278160,431,894160,264,035167,8592,219,9722,219,9723,0706,3806,366144514510
Chromosome 6AllAssembled moleculeUnlocalized scaffolds156,992,134156,897,50894,62642238240137,232,761137,139,58293,1791,885,7841,885,7842,8685,1485,14623813810
Chromosome 7AllAssembled moleculeUnlocalized scaffolds143,779,861143,501,887277,97458748899133,247,910133,027,321220,5891,944,2171,944,2173,5475,5315,509224874870
Chromosome 8AllAssembled moleculeUnlocalized scaffolds132,623,603132,457,389166,21441836850125,189,386125,067,740121,6462,088,5802,088,5804,1664,5584,533253673670
Chromosome 9AllAssembled moleculeUnlocalized scaffolds121,697,944121,549,591148,35334330736113,538,257113,444,83993,4182,793,4432,793,4434,0424,4374,43073063060
Chromosome 10AllAssembled moleculeUnlocalized scaffolds112,338,145112,200,500137,64533028347107,269,226107,164,801104,4253,022,7133,249,5353,3373,9013,89292822820
Chromosome 11AllAssembled moleculeUnlocalized scaffolds93,624,63693,518,069106,5672812275484,601,79984,503,91297,8872,043,1222,043,1222,5792,8042,80042262260
Chromosome 12AllAssembled moleculeUnlocalized scaffolds54,533,54754,450,79682,7512992643548,043,93147,973,78970,1422,286,2722,286,2723,0672,7822,77482632630
Chromosome 13AllAssembled moleculeUnlocalized scaffolds118,865,235118,718,031147,20434529550105,330,842105,209,983120,8592,316,0232,316,0233,4284,0404,03282942940
Chromosome 14AllAssembled moleculeUnlocalized scaffolds115,265,452115,151,701113,75135531441106,559,423106,466,72492,6992,515,6812,515,6813,2604,2764,27243133130
Chromosome 15AllAssembled moleculeUnlocalized scaffolds114,763,217114,627,140136,07739731582102,857,937102,726,165131,7721,889,6441,889,6442,5774,1514,14653143140
Chromosome 16AllAssembled moleculeUnlocalized scaffolds90,155,11490,051,983103,1313232804383,339,70583,255,31384,3922,327,5792,327,5792,9713,4333,42762792790
Chromosome 17AllAssembled moleculeUnlocalized scaffolds92,654,00492,503,511150,4933042594584,170,73584,042,631128,1042,127,2742,127,2743,7373,5043,493112582580
Chromosome 18AllAssembled moleculeUnlocalized scaffolds87,368,73887,229,863138,8752742403481,587,10981,508,31378,7962,266,4462,266,44611,2792,8772,86892392390
Chromosome 19AllAssembled moleculeUnlocalized scaffolds73,001,19972,914,58786,6122001782257,955,49457,909,09046,4043,014,0923,014,0929,2122,7852,77781771770
Chromosome 20AllAssembled moleculeUnlocalized scaffolds57,866,20657,791,88274,3242091753452,122,01652,052,10269,9141,626,8371,626,8372,7582,3832,38031741740
Chromosome XAllAssembled moleculeUnlocalized scaffolds155,074,119154,597,545476,574697556141136,236,170135,968,488267,6821,551,4041,551,40410,0736,6116,556555555550
unplacedAssembled molecule2,937,4571,4391,637,0606,4863510
MoleculeTotal
Length
Mitochondrion MT16,313