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CanFam3.1

Organism name:
Canis lupus familiaris
Infraspecific name:
Breed: boxer
Sex:
female
BioSample:
SAMN02953603
Submitter:
Dog Genome Sequencing Consortium
Date:
2011/11/02
Synonyms:
canFam3
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000002285.2 (latest)
RefSeq assembly accession:
GCF_000002285.3 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT.
Data displayed for RefSeq version
WGS Project:
AAEX03
Assembly method:
Arachne v. April 2010
Genome coverage:
7x plus >90Mb finished sequence
Sequencing technology:
Sanger

IDs: 317138 [UID] 313658 [GenBank] 317138 [RefSeq]

See Genome Information for Canis lupus

There are 3 assemblies for this organism

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History (Show revision history)

Global statistics

Total sequence length2,410,976,875
Total assembly gap length18,261,639
Gaps between scaffolds80
Number of scaffolds3,310
Scaffold N5045,876,610
Number of contigs27,106
Contig N50267,478
Total number of chromosomes and plasmids40

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_000000145.2)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM000001.3=NC_006583.30
Chromosome 2CM000002.3=NC_006584.30
Chromosome 3CM000003.3=NC_006585.30
Chromosome 4CM000004.3=NC_006586.30
Chromosome 5CM000005.3=NC_006587.30
Chromosome 6CM000006.3=NC_006588.30
Chromosome 7CM000007.3=NC_006589.30
Chromosome 8CM000008.3=NC_006590.30
Chromosome 9CM000009.3=NC_006591.30
Chromosome 10CM000010.3=NC_006592.30
Chromosome 11CM000011.3=NC_006593.30
Chromosome 12CM000012.3=NC_006594.30
Chromosome 13CM000013.3=NC_006595.30
Chromosome 14CM000014.3=NC_006596.30
Chromosome 15CM000015.3=NC_006597.30
Chromosome 16CM000016.3=NC_006598.30
Chromosome 17CM000017.3=NC_006599.30
Chromosome 18CM000018.3=NC_006600.30
Chromosome 19CM000019.3=NC_006601.30
Chromosome 20CM000020.3=NC_006602.30
Chromosome 21CM000021.3=NC_006603.30
Chromosome 22CM000022.3=NC_006604.30
Chromosome 23CM000023.3=NC_006605.30
Chromosome 24CM000024.3=NC_006606.30
Chromosome 25CM000025.3=NC_006607.30
Chromosome 26CM000026.3=NC_006608.30
Chromosome 27CM000027.3=NC_006609.30
Chromosome 28CM000028.3=NC_006610.30
Chromosome 29CM000029.3=NC_006611.30
Chromosome 30CM000030.3=NC_006612.30
Chromosome 31CM000031.3=NC_006613.30
Chromosome 32CM000032.3=NC_006614.30
Chromosome 33CM000033.3=NC_006615.30
Chromosome 34CM000034.3=NC_006616.30
Chromosome 35CM000035.3=NC_006617.30
Chromosome 36CM000036.3=NC_006618.30
Chromosome 37CM000037.3=NC_006619.30
Chromosome 38CM000038.3=NC_006620.30
Chromosome XCM000039.3=NC_006621.30
unplacedn/an/an/a3,228

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Chromosome 1122,678,7852122,070,62369,553,6531,1202
Chromosome 285,426,708484,986,33445,293,1518244
Chromosome 391,889,043391,547,40854,667,3547043
Chromosome 488,276,631288,054,60677,783,4656202
Chromosome 588,915,250488,556,67256,102,4078884
Chromosome 677,573,801577,066,67859,841,9127815
Chromosome 780,974,532480,608,03261,909,3996034
Chromosome 874,330,416274,071,57272,170,3175812
Chromosome 961,074,082560,688,64313,298,9807595
Chromosome 1069,331,447268,960,67352,772,7057422
Chromosome 1174,389,097274,159,34465,333,8075312
Chromosome 1272,498,081172,323,87072,497,9814811
Chromosome 1363,241,923262,975,55533,587,5364862
Chromosome 1460,966,679160,715,39060,966,5793441
Chromosome 1564,190,966163,855,49564,190,8666361
Chromosome 1659,632,846359,207,91620,537,3764393
Chromosome 1764,289,059264,090,34951,516,0825112
Chromosome 1855,844,845255,531,04330,512,7705872
Chromosome 1953,741,614253,607,16835,994,9293022
Chromosome 2058,134,056257,839,69432,947,5326852
Chromosome 2150,858,623150,623,16250,858,5233731
Chromosome 2261,439,934261,283,60655,660,2653692
Chromosome 2352,294,480152,169,44852,294,3803071
Chromosome 2447,698,779147,496,27347,698,6794541
Chromosome 2551,628,933451,352,42527,168,1053804
Chromosome 2638,964,690238,804,93426,115,8433892
Chromosome 2745,876,710145,726,04145,876,6103921
Chromosome 2841,182,112340,985,91039,421,9023923
Chromosome 2941,845,238141,709,47741,845,1382631
Chromosome 3040,214,260140,042,58040,214,1603711
Chromosome 3139,895,921239,763,05538,889,6072862
Chromosome 3238,810,281138,755,07238,810,1811891
Chromosome 3331,377,067231,238,53319,069,6832622
Chromosome 3442,124,431241,922,62829,647,8462952
Chromosome 3526,524,999126,416,64726,524,8992101
Chromosome 3630,810,995130,684,65230,810,8952531
Chromosome 3730,902,991130,741,65330,902,8913261
Chromosome 3823,914,537123,779,07623,914,4373071
Chromosome X123,869,1422123,181,734123,773,6081,0311
unplaced83,326,1643,22875,104,53864,1234,3230
MoleculeTotal
Length
Mitochondrion MT16,727