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MedtrA17_3.5

Description:
Medicago truncatula A17 assembly, version 3.5
Organism name:
Medicago truncatula
Infraspecific name:
Strain: A17
Submitter:
International Medicago Genome Annotation Group
Date:
2011/08/12
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000219495.1 (replaced)
RefSeq assembly accession:
GCF_000219495.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome Pltd.
Data displayed for RefSeq version

IDs: 317928 [UID] 299198 [GenBank] 317928 [RefSeq]

See Genome Information for Medicago truncatula

History (Show revision history)

Global statistics

Total sequence length314,477,977
Total assembly gap length51,567,675
Gaps between scaffolds279
Number of scaffolds421
Scaffold N501,268,006
Number of contigs976
Contig N50488,075
Total number of chromosomes and plasmids9

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_000219505.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM001217.1=NC_016407.10
Chromosome 2CM001218.1=NC_016408.10
Chromosome 3CM001219.1=NC_016409.10
Chromosome 4CM001220.1=NC_016410.10
Chromosome 5CM001221.1=NC_016411.10
Chromosome 6CM001222.1=NC_016412.10
Chromosome 7CM001223.1=NC_016413.10
Chromosome 8CM001224.1=NC_016414.10
unplacedn/an/an/a146

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Chromosome 134,297,6844326,133,815799,1257044
Chromosome 234,376,0353329,049,5991,167,0818833
Chromosome 343,359,0964334,949,0961,061,1473544
Chromosome 447,685,3685037,600,5251,039,07011551
Chromosome 542,630,297342,340,23021,255,707162
Chromosome 623,282,1622917,099,623949,6976030
Chromosome 738,853,2623932,317,8721,258,86310240
Chromosome 832,567,5803426,012,8431,541,5366035
unplaced17,302,46014617,282,666134,974110
MoleculeTotal
Length
Chloroplast Pltd124,033