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Msex_1.0

Organism name:
Manduca sexta (tobacco hornworm)
Sex:
male
BioSample:
SAMN00779869
Submitter:
Human Genome Sequencing Center - BCM
Date:
2012/05/24
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000262585.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
AIXA01
Assembly method:
Newbler v. 2.3
Genome coverage:
80.7x
Sequencing technology:
454

IDs: 382238 [UID] 382238 [GenBank]

See Genome Information for Manduca sexta

History (Show revision history)

Comment

DNA is from a single male pupa from the Kansas State University Manduca sexta colony, collected after 4 generations of single pair sibling inbreeding. Siblings of the sequenced individual (2 adult males, 2 adult females) were deposited in the ... Kansas State University Museum of Entomological and Prairie Arthropod Research  more

Global statistics

Total sequence length419,424,057
Total assembly gap length19,768,899
Gaps between scaffolds0
Number of scaffolds20,871
Scaffold N50664,006
Scaffold L50169
Number of contigs38,380
Contig N5040,396
Contig L502,703
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced419,412,26120,868399,643,362664,00617,5090
MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Mitochondrion MTAllAssembled moleculeUnlocalized scaffolds11,796011,79630311,796011,79610,639010,639000000