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ASM16085v1

Organism name:
Lactobacillus helveticus DSM 20075 = CGMCC 1.1877
Infraspecific name:
Strain: DSM 20075
BioSample:
SAMN00139430
Submitter:
Baylor College of Medicine
Date:
2009/09/22
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000160855.1 (latest)
RefSeq assembly accession:
GCF_000160855.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ACLM01

IDs: 192478 [UID] 192458 [GenBank] 192478 [RefSeq]

See Genome Information for Lactobacillus helveticus

There are 14 assemblies for this organism

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History (Show revision history)

Comment

This sequence is generated as a part of the Human Microbiome Project (HMP), funded by the National Institutes of Health (NIH), National Human Genome Research Institute (NHGRI) Large-Scale Sequencing Research Network and the National Institute of Allergy and Infectious ... Diseases (NIAID) Microbial Genome Sequencing Centers Program. The mission of the HMP is to generate resources to enable the characterization of the human microbiota, the microbial communities living within human bodies, and analyze the role of these organisms in human health and disease.
 The sequenced strain was obtained from DSMZ. The sequence generated included at least 10 fold coverage of Roche/454 Lifesciences FLX fragment data and at least 8 fold clone coverage of Roche/454 Lifesciences paired-end data.
 The Roche/454 Lifesciences sequence was assembled using the Roche/454 Lifescience Newbler assembler. The contigs from the Newbler assembly were aligned to the Illumina/Solexa data with mapping tools such as Mosaic and Crossmatch and these data were used for error correction for this version of the draft assembly. This draft assembly meets the HMP draft quality standards (more than 90% of the genome is included in contigs, more than 90% of a core set of bacterial genes are found with > 30% identity and > 30% length; more than 90% of the bases in the assembly have more than 5 fold sequence coverage, the contig N50 length is greater than 5kb, the scaffold N50 length is greater than 20kb, and there is less than 1 gap per 5kb).
 This is a reference genome for the Human Microbiome Project.
This project is co-owned with the Human Microbiome Project DACC.
Genome Coverage: 34x
Sequencing Technology: 454

Annotation was added to the contigs in September 2009.  more

Global statistics

Total sequence length2,020,582
Total assembly gap length211,915
Gaps between scaffolds0
Number of scaffolds49
Scaffold N50288,743
Number of contigs235
Contig N5015,586
Total number of chromosomes and plasmids0

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Global assembly definition

Download the full sequence report
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,020,582491,808,667288,7431860